Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00658 ATGGGATTTGCCAACATTCTCTCCACCCTTTGTTTATTGGGGCTAACCCTAACCCTAACCCTAACCCTAACCCTAGCTTCTACTGCTCCCAGCTTGGCCAAAAGCTCCCCCAAAAACTACATTGACGCACACAATGCCGTCCGTGCAGCGGTTGGCGTCGAGCCTCTTCATTGGAACTCGACTTTGGCTGATTATGCTCAAAATTACGCCAACACGAAGATCGCTACTTGTCAAATGGAGCACTCGGGAGGACCGTATGGCGAAAACCTAGCAGAGGGAAACGAAGTAATGACAGCTGAGACAGCAGTGAGTCTCTGGGCCGACGAGAAGAAACATTACGACTACAATTCGAATACGTGCAGCAATGACCCTAGCAATTGCCTCCATTATACACAGTTGGTATGGAGTAACACAAAATCTGTTGGTTGTGCACAAGTGAAATGCCAAAACAATTGGGTGTTTTTGATATGCAGCTATTATCCTCCAGGCAACTATAATGGCCAACGTCCATATTAA 516 46.9 MGFANILSTLCLLGLTLTLTLTLTLASTAPSLAKSSPKNYIDAHNAVRAAVGVEPLHWNSTLADYAQNYANTKIATCQMEHSGGPYGENLAEGNEVMTAETAVSLWADEKKHYDYNSNTCSNDPSNCLHYTQLVWSNTKSVGCAQVKCQNNWVFLICSYYPPGNYNGQRPY* 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4719160 4720042 + CsaV3_7G007570.1 Csa07g00658 536221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00658 171 SMART SCP_3 35 167 IPR014044 -
Csa07g00658 171 CDD CAP_PR-1 37 171 - -
Csa07g00658 171 Gene3D CAP 35 171 IPR035940 -
Csa07g00658 171 PRINTS Allergen V5/Tpx-1 family signature 56 74 IPR001283 -
Csa07g00658 171 PRINTS Allergen V5/Tpx-1 family signature 102 115 IPR001283 -
Csa07g00658 171 PRINTS Allergen V5/Tpx-1 family signature 127 143 IPR001283 -
Csa07g00658 171 PRINTS Allergen V5/Tpx-1 family signature 154 167 IPR001283 -
Csa07g00658 171 PANTHER PATHOGENESIS-RELATED PROTEIN 1 27 171 - -
Csa07g00658 171 SUPERFAMILY PR-1-like 10 171 IPR035940 -
Csa07g00658 171 Pfam Cysteine-rich secretory protein family 42 159 IPR014044 -
Csa07g00658 171 ProSitePatterns CRISP family signature 2. 154 165 IPR018244 GO:0005576
Csa07g00658 171 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 27 171 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00658 K13449 PR1; pathogenesis-related protein 1 - csv:101210987 324.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00658 Csa-Chr7:4719160 Csa07g00663 Csa-Chr7:4733920 3.92E-54 dispersed
Csa07g00657 Csa-Chr7:4717004 Csa07g00658 Csa-Chr7:4719160 2.10E-60 tandem
Csa07g00658 Csa-Chr7:4719160 Csa07g00659 Csa-Chr7:4722230 7.53E-63 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002300 0 1 0 0 0 16 0 4 4 0 1 3 1 1 1 2 2 0 1 3 1 1 0 3 1 10 1 2 4 0 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00658 Csa_Chr07 FPKM 47.927639 51.725124 40.910809 42.981354 42.592323 40.395302 41.337936 72.852577 72.702675 80.830971