Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00663 ATGGCTCTCCTCATGAAGATGATCTCTCTCTCCCTCCTTTTTTTCTTGACTTCTTCCACTATATTATTCACCTCCTCTATCGCTCAAGACTTGCCTCAAAACTTCGTCGACGCCCACAACGCTGCTCGTGCCCAAGTTGGCGTCGGACCTGTCAGTTGGGATGAAACTGTAGCGAACTACGCACAACAATATGCCAACCAACACATCAATGACTGCCAAATGGTACACTCTAACGGGCCATATGGGGAGAATCTTGCTTGGAGCTCAGCTGATTTGTCAGGTACCAATGCAGTTCAAATGTGGGTGAATGAGAAACAGTTCTATGATTATGCCTCAAACTCGTGCGTCCGCAGTGAGTGTCGCCACTACACTCAGGTGGTGTGGAAAAACTCTGTAAAAATTGGATGCGCAAAAGTGGAATGCAATAACAATGGTGGCACCTTCATCACTTGCAACTATGATCCTAGTGGCAACTATGTAAACCAAAGGCCATACTAA 498 46.18 MALLMKMISLSLLFFLTSSTILFTSSIAQDLPQNFVDAHNAARAQVGVGPVSWDETVANYAQQYANQHINDCQMVHSNGPYGENLAWSSADLSGTNAVQMWVNEKQFYDYASNSCVRSECRHYTQVVWKNSVKIGCAKVECNNNGGTFITCNYDPSGNYVNQRPY* 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4733920 4734764 - CsaV3_7G007620.1 Csa07g00663 536226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00663 165 PANTHER PATHOGENESIS-RELATED PROTEIN 1 23 165 - -
Csa07g00663 165 ProSitePatterns CRISP family signature 1. 121 131 IPR018244 GO:0005576
Csa07g00663 165 SMART SCP_3 30 161 IPR014044 -
Csa07g00663 165 CDD CAP_PR-1 32 165 - -
Csa07g00663 165 Pfam Cysteine-rich secretory protein family 36 153 IPR014044 -
Csa07g00663 165 Gene3D CAP 24 165 IPR035940 -
Csa07g00663 165 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 23 165 IPR001283 -
Csa07g00663 165 SUPERFAMILY PR-1-like 16 165 IPR035940 -
Csa07g00663 165 PRINTS Allergen V5/Tpx-1 family signature 51 69 IPR001283 -
Csa07g00663 165 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Csa07g00663 165 PRINTS Allergen V5/Tpx-1 family signature 120 136 IPR001283 -
Csa07g00663 165 PRINTS Allergen V5/Tpx-1 family signature 148 161 IPR001283 -
Csa07g00663 165 ProSitePatterns CRISP family signature 2. 148 159 IPR018244 GO:0005576
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00663 K13449 PR1; pathogenesis-related protein 1 - csv:101211811 332.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02120 Csa-Chr1:18484053 Csa07g00663 Csa-Chr7:4733920 7.67E-54 dispersed
Csa07g00658 Csa-Chr7:4719160 Csa07g00663 Csa-Chr7:4733920 3.92E-54 dispersed
Csa07g00659 Csa-Chr7:4722230 Csa07g00663 Csa-Chr7:4733920 5.04E-60 dispersed
Csa07g00661 Csa-Chr7:4728016 Csa07g00663 Csa-Chr7:4733920 2.16E-53 dispersed
Csa07g00663 Csa-Chr7:4733920 Csa07g00665 Csa-Chr7:4743514 2.72E-77 dispersed
Csa07g00662 Csa-Chr7:4730797 Csa07g00663 Csa-Chr7:4733920 1.08E-58 tandem
Csa07g00663 Csa-Chr7:4733920 Csa07g00664 Csa-Chr7:4737383 2.62E-68 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g793 . . Bda06g01148 . . . . . . . . . . . . . . . . . . . . . Cla02g00706 Cam02g0740 Cec02g0754 Cco02g0780 Clacu02g0749 Cmu02g0743 Cre02g1057 . . . . Lsi03g00622 Csa07g00663 . Cme01g00140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00151 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00663 Csa_Chr07 FPKM 41.955357 43.167076 70.124794 69.868713 37.976402 32.561478 42.152191 89.697418 90.419838 102.358376