Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00664 ATGATTTTGGCCTCAATTTTTCTATGGTTATTAATTGTGCCTTGTGATGAAGTAGGATTCATGAAGTTGGGAAATATGGCGATGGCAGATCAAGATTTTATGGCTACTTTACCATTTGGAGGATCAACCTCCTCTAGTGTGGTTGGAAGGTTCATCCAACTTCCTCAATGCGGTGGCCCTCCCAGTCGCGGGACAGACTCACCTCAAGACTTCGTCGGTGTCCACAACGTAGCTCGTGCACAAGTTGGCGTTGGGCCGATTGAGTGGGACAAAACAGTAGCGAGTTTTGCTCAACAATATGCGAACCGACGCTTCAACGACTGTAGGCTAGTGAACTCTGGCGGACCTTACGGGGAGAATATTGCATGGGGCAGCCCAGACTTATCAGCCAAAGATGCAGTTCAGTTGTGGGTGGATGAGAAGCCATTCTACAATTATGAGACCAATACATGTGCGGCTGGCGAGTTGTGTGGTCATTACACTCAAGTAGTGTGGAGGAAGTCAGTCAGAATAGGATGTGCCAAAGTGAGATGCACAGATAATATTGGTGGCACATTCATCATTTGCAACTATGAACCCCCTGGCAATTTCTTATACCAAAGGCCATATTGA 612 46.73 MILASIFLWLLIVPCDEVGFMKLGNMAMADQDFMATLPFGGSTSSSVVGRFIQLPQCGGPPSRGTDSPQDFVGVHNVARAQVGVGPIEWDKTVASFAQQYANRRFNDCRLVNSGGPYGENIAWGSPDLSAKDAVQLWVDEKPFYNYETNTCAAGELCGHYTQVVWRKSVRIGCAKVRCTDNIGGTFIICNYEPPGNFLYQRPY* 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4737383 4739312 + CsaV3_7G007630.1 Csa07g00664 536227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00664 203 ProSitePatterns CRISP family signature 2. 186 197 IPR018244 GO:0005576
Csa07g00664 203 SMART SCP_3 66 199 IPR014044 -
Csa07g00664 203 PRINTS Allergen V5/Tpx-1 family signature 87 105 IPR001283 -
Csa07g00664 203 PRINTS Allergen V5/Tpx-1 family signature 133 146 IPR001283 -
Csa07g00664 203 PRINTS Allergen V5/Tpx-1 family signature 157 173 IPR001283 -
Csa07g00664 203 PRINTS Allergen V5/Tpx-1 family signature 186 199 IPR001283 -
Csa07g00664 203 Gene3D CAP 66 203 IPR035940 -
Csa07g00664 203 PRINTS Venom allergen 5 signature 52 72 IPR002413 -
Csa07g00664 203 PRINTS Venom allergen 5 signature 131 146 IPR002413 -
Csa07g00664 203 PRINTS Venom allergen 5 signature 156 175 IPR002413 -
Csa07g00664 203 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 62 203 IPR001283 -
Csa07g00664 203 ProSitePatterns CRISP family signature 1. 158 168 IPR018244 GO:0005576
Csa07g00664 203 Pfam Cysteine-rich secretory protein family 74 191 IPR014044 -
Csa07g00664 203 PANTHER PATHOGENESIS-RELATED PROTEIN 1 62 203 - -
Csa07g00664 203 SUPERFAMILY PR-1-like 66 203 IPR035940 -
Csa07g00664 203 CDD CAP_PR-1 68 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00664 K13449 PR1; pathogenesis-related protein 1 - csv:101211732 433.335
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01487 Csa-Chr2:14268403 Csa07g00664 Csa-Chr7:4737383 7.01E-34 dispersed
Csa07g00664 Csa-Chr7:4737383 Csa07g00667 Csa-Chr7:4750587 1.88E-68 dispersed
Csa07g00663 Csa-Chr7:4733920 Csa07g00664 Csa-Chr7:4737383 2.62E-68 tandem
Csa07g00664 Csa-Chr7:4737383 Csa07g00665 Csa-Chr7:4743514 9.21E-73 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g792 . Blo03g00053 Bda06g01149 . Bpe07g00298 . Bma05g00636 Bma12g00310 Cmo19g00543 . . . . . . Cpe04g00336 Cpe15g00425 . . . . . . . Cla02g00705 Cam02g0738 Cec02g0752 Cco02g0778 Clacu02g0748 Cmu02g0742 Cre02g1056 . . . . Lsi03g00618 Csa07g00664 . Cme01g00139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00150 Cme07g02221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00664 Csa_Chr07 FPKM 65.455284 67.164909 102.635201 97.533592 80.179291 105.865425 80.222511 121.640724 139.877518 124.666878