Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00665 ATGGATCTTCTCAACCTCTCCTGCATTCTCTTTTGTGTCTTGAGCTGCTTCACCATGCTTCCCTCTTCTCTCGCTCAAGACTCGCCCCAAGACTACGTCAATAGCCACAATCATGCTCGTGCCGCAGTTGGGGTTGGACCTATCAAATGGGACGAGAAGGTGGCAAACTATTCCAGATATTACGCCAACAAACGGATGAATGATTGTAGGTTGGTGCATTCAAATGGACCATACGGGGAGAATATTGCATGGGGTAGCCCTGACTTGAGTGGCATCAATGCAGTCAAACTTTGGGTAGATGAGAAGCAATACTACAACTATAACAGCAACTCATGCGCCAGCGGCAAGGTGTGTGGCCATTATACTCAAGTGGTTTGGAAGAATTCAATGAGACTTGGATGTGCAAAAGTGAAGTGCAAAAATAAAGGTGGTGCATTTATTGTTTGCAACTATGACCCTAGAGGCAATATTGTTGGTCAGAGGCCATATTAA 492 45.33 MDLLNLSCILFCVLSCFTMLPSSLAQDSPQDYVNSHNHARAAVGVGPIKWDEKVANYSRYYANKRMNDCRLVHSNGPYGENIAWGSPDLSGINAVKLWVDEKQYYNYNSNSCASGKVCGHYTQVVWKNSMRLGCAKVKCKNKGGAFIVCNYDPRGNIVGQRPY* 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4743514 4744161 + CsaV3_7G007640.1 Csa07g00665 536228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00665 163 Pfam Cysteine-rich secretory protein family 34 151 IPR014044 -
Csa07g00665 163 CDD CAP_PR-1 29 163 - -
Csa07g00665 163 SMART SCP_3 27 159 IPR014044 -
Csa07g00665 163 ProSitePatterns CRISP family signature 2. 146 157 IPR018244 GO:0005576
Csa07g00665 163 PANTHER PATHOGENESIS-RELATED PROTEIN 1 21 163 - -
Csa07g00665 163 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Csa07g00665 163 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Csa07g00665 163 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Csa07g00665 163 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Csa07g00665 163 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
Csa07g00665 163 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 21 163 IPR001283 -
Csa07g00665 163 SUPERFAMILY PR-1-like 9 163 IPR035940 -
Csa07g00665 163 Gene3D CAP 27 163 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00665 K13449 PR1; pathogenesis-related protein 1 - csv:101213016 353.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03219 Csa-Chr3:29631114 Csa07g00665 Csa-Chr7:4743514 9.28E-44 dispersed
Csa06g02765 Csa-Chr6:24156775 Csa07g00665 Csa-Chr7:4743514 2.56E-61 dispersed
Csa07g00662 Csa-Chr7:4730797 Csa07g00665 Csa-Chr7:4743514 7.42E-56 dispersed
Csa07g00663 Csa-Chr7:4733920 Csa07g00665 Csa-Chr7:4743514 2.72E-77 dispersed
Csa07g00665 Csa-Chr7:4743514 Csa07g00667 Csa-Chr7:4750587 1.57E-76 proximal
Csa07g00664 Csa-Chr7:4737383 Csa07g00665 Csa-Chr7:4743514 9.21E-73 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g790 . Blo03g00054 Bda06g01150 . . . Bma05g00637 . Cmo19g00544 Cmo11g01430 . . . . Sed10g1935 . . Bhi05g01000 Tan02g1067 Cmetu01g2331 Lac12g0135 . . . Cla02g00703 Cam02g0736 Cec02g0750 Cco02g0776 Clacu02g0746 Cmu02g0741 Cre02g1054 . . . . Lsi03g00608 Csa07g00665 . Cme01g00137 . . . . . . . . . . . . Cma19g00535 . . . . . . . . . . . . . . . . . . . . Chy01g00149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00665 Csa_Chr07 FPKM 8.690724 8.237655 6.673053 5.827938 3.817311 3.378664 3.72071 5.938019 6.119811 6.994414