Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00682 ATGGAAAACAAGGAAACTGCCGGCGATGCCGATCGTCCATGGCAGTCTTATCACACTGTCTACACCAATGCAAAAGCCGGTATGGAAGGAGTTGACAAGGAGAGAGTACAAAGAATTGTATATGAAATGAGTAAAGGGTCAAAATATTTTGAAAACGAGGAGCGGAAAGAGGCCACCATCAGAGAAAAGATTGAGAATATGCGAGCTAGGTGTGCACAGCTTACAGCAACGGATCTTTCTCAGTATCAAAAGGTTGCAGATAAAAGAATTTTGGAGCTGGAAAGTACACGCGATCTATCAAGGATATGGTTGCATGTAGATATGGATGCTTTCTATGCCGCTGTTGAAACTTTAAGCAATCCTTTGTTAAAGGGCAAGCCGATGGCTGTTGGTAGCATGTCTATGCTTTCCACTGCTAACTACGAGGCTCGAAAGTATGGTGTTCGTGCTGCTATGCCTGGTTTTATTGCACGTAGATTATGCCCAGAGTTAATTCTTGTTCCCACAAATTTTGATAAGTATAATTATTACAGTGATTTAACTAGAAAAGTATTTCATAGGTATGATCCCAACTTCTTGGCTGCTAGTCTGGATGAAGCATACCTTGATATAACTGAAGTTTGCAAAGAAAGAGGCCTTACAAGTGAAGAAATTGCTAAGGATCTTAGAACCAGTATTTTTGAAGAGACGGGTCTTACGTGTAGTGCCGGAGTTGCTGCCAACCGACTACTTGCCAAGGTTTGTTCTGATATTAACAAACCAAATGGACAGTTCATTTTACCAAATGACCGAAGAGCTATTGTTACATTCATATCATCGCTACCTATAAGAAAGATTGGTGGGATTGGAAAGGTCACTGAACATATCTTAAAGGATGCTTTGGGGATTAATACATGTGAGGAGATGCTACAAAAGGGTGGCCACCTCTGTGCATTGTTTTCTCAATCCTCAGCAGATTTTTTCTTATCGGTTGGGCTTGGCCTTGGGAGCACCGATACTCCACAGGTTAGATTTCGAAAGAGCATCAGCAACGAGAGAACTTTTGCAGCCACCACTGATGAAAGATTAATATTCCAAAAACTTGCTGACCTTGCGGAGATGCTGTCAATGGACATGGAAAAAGAAGGTCTAACTGGGCGGACACTGACTCTTAAACTAAAAACTGCATCCTTTGAGGTTAGAACCAGAGCTGTAACTTTGCAAAAATACATTTGCTCCAGCAGTGACATCTTGCAACAGGCATCAAGGCTACTAAAGGCTGAACTGCCCGTTTCTCTAAGACTAATCGGGCTGCGGATATCTCAGTTCAATGAAGATGGAGCCACTGCTGGGTTGGATCCAACCCAAATATCTATTACTAGATTTATTACGTCAGGAGATGCTACAAGAAAGAGTACGGGTGATTGTTGCTCCTTGAATACTGATTCTAACAATCATGGTTTCATGGATGACACAGAAATTGATACATGCATCGATGGTTATGGTACTGATTCTGAAACACACCATCAAGTCAGCAATCAAAGAATCGACAACAAATTCTCAAATATGGATGATAGCAACTGTACGTCGACCAATGATGCTGAGAAGTCAGAGGAACCTGAGAACCTTTTGAGAAACGCCAGCGCTGATCAGGCAAACATTTCTACTGCCATAGGAAGCACCTCAGATTCCTCGGATGCCTTAATCCGTCGAGTCTCAAGCACAGCATGTTCTTCATCAAGAAACCTTGAAGGCAATCCAAATAATAATGTGGATGGTGAAAATCAGGTCGAGGTAAGATCACCAGATAATAACGGGCAGATTTGGTGGATAGACAACTACAAATGTACAATCTGCGGTGCTGAAGTACCAGCGAGTTTCGTTGACGAAAGACAGGAGCATATAGATTTCCACATTGCGGAAAAACTTCAGGAAGAGGAATCTGGCATTCGTTCAAGAACCCATATGCCAAGGCAAAGAACTGCTGACAAGAACCTACTGTCTAGTCCAAGGAAGCCCAAAAGGCAAAAGTCAACTCCAGAGAAAGAGGTCAAACATATTCCAATCGACTTATTCTTTATGAAGACTAATCAGAAGTTTTAA 2082 41.93 MENKETAGDADRPWQSYHTVYTNAKAGMEGVDKERVQRIVYEMSKGSKYFENEERKEATIREKIENMRARCAQLTATDLSQYQKVADKRILELESTRDLSRIWLHVDMDAFYAAVETLSNPLLKGKPMAVGSMSMLSTANYEARKYGVRAAMPGFIARRLCPELILVPTNFDKYNYYSDLTRKVFHRYDPNFLAASLDEAYLDITEVCKERGLTSEEIAKDLRTSIFEETGLTCSAGVAANRLLAKVCSDINKPNGQFILPNDRRAIVTFISSLPIRKIGGIGKVTEHILKDALGINTCEEMLQKGGHLCALFSQSSADFFLSVGLGLGSTDTPQVRFRKSISNERTFAATTDERLIFQKLADLAEMLSMDMEKEGLTGRTLTLKLKTASFEVRTRAVTLQKYICSSSDILQQASRLLKAELPVSLRLIGLRISQFNEDGATAGLDPTQISITRFITSGDATRKSTGDCCSLNTDSNNHGFMDDTEIDTCIDGYGTDSETHHQVSNQRIDNKFSNMDDSNCTSTNDAEKSEEPENLLRNASADQANISTAIGSTSDSSDALIRRVSSTACSSSRNLEGNPNNNVDGENQVEVRSPDNNGQIWWIDNYKCTICGAEVPASFVDERQEHIDFHIAEKLQEEESGIRSRTHMPRQRTADKNLLSSPRKPKRQKSTPEKEVKHIPIDLFFMKTNQKF* 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4882370 4889127 + CsaV3_7G007810.1 Csa07g00682 536245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00682 693 Pfam impB/mucB/samB family 106 250 IPR001126 GO:0006281
Csa07g00682 693 ProSiteProfiles Zinc finger UBZ3-type profile. 602 639 IPR041298 -
Csa07g00682 693 MobiDBLite consensus disorder prediction 508 535 - -
Csa07g00682 693 CDD PolY_Pol_IV_kappa 104 436 IPR022880 GO:0003887
Csa07g00682 693 Pfam impB/mucB/samB family C-terminal domain 339 440 IPR017961 GO:0003684|GO:0006281
Csa07g00682 693 MobiDBLite consensus disorder prediction 508 523 - -
Csa07g00682 693 MobiDBLite consensus disorder prediction 639 677 - -
Csa07g00682 693 ProSiteProfiles UmuC domain profile. 103 283 IPR001126 GO:0006281
Csa07g00682 693 PIRSF DNA_pol_eta 212 458 - -
Csa07g00682 693 PIRSF DNA_pol_eta 329 690 - -
Csa07g00682 693 PIRSF DNA_pol_eta 95 218 - -
Csa07g00682 693 MobiDBLite consensus disorder prediction 568 594 - -
Csa07g00682 693 Gene3D - 108 258 IPR043128 -
Csa07g00682 693 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 7 658 - -
Csa07g00682 693 Gene3D - 259 332 - -
Csa07g00682 693 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 337 434 IPR036775 GO:0003684|GO:0006281
Csa07g00682 693 SUPERFAMILY DNA/RNA polymerases 77 331 IPR043502 -
Csa07g00682 693 PANTHER DNA POLYMERASE KAPPA 7 658 - -
Csa07g00682 693 Hamap DNA polymerase IV [dinB]. 100 452 IPR022880 GO:0003887
Csa07g00682 693 Coils Coil 50 70 - -
Csa07g00682 693 Gene3D - 21 107 - -
Csa07g00682 693 Pfam Ubiquitin-Binding Zinc Finger 605 639 IPR041298 -
Csa07g00682 693 Gene3D - 337 442 IPR036775 GO:0003684|GO:0006281
Csa07g00682 693 Gene3D - 120 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00682 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7] - csv:101212452 1364.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00682 Csa-Chr7:4882370 Csa07g00711 Csa-Chr7:5065494 3.90E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00682 Csa_Chr07 FPKM 16.920683 22.364614 44.715492 42.93824 4.526581 6.785816 6.282326 2.123339 2.472064 1.857924