Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00687 ATGAACGTAGAGGTGAGTGAGAATAATTTGCAGCCTTGTTTTGAAGAAGCTGAGTTGATAAAATTACCCGAAGAAGAAGCTGCTCATTATCACATTGATCAGATTAATTGCAAGAAAAGATCAAGAGGAGAATTTGGAGATCATGTACAAAAGGGGAGGAATGAGAGATCAAAGAAAGCTCAAAAGCTTACCTCAAGCACCAACACTACTGAAGAAGATGGCAATGCTGGCCTTAGCAGGCAAAGCACAAGCACCTACTGCTCGGAAGACGAATCCAACGCCTCTCTCGATCAAAACGGTGGAGCTAATAACTCCAGATCAAGTCTGAATGGGGCGAACAAATCCCGAGCCAGCAGAGGCTCAGCCACAGACCCTCAGAGCCTTTATGCAAGAAAAAGAAGAGAAAGAATTAATGAGAGGTTGAGAATCTTACAGACCCTTGTCCCAAATGGAACGAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATACGTGAAGTTTCTACAACTCCAAATCAAGCTACTAAGCTCTGATGACTTATGGATGTACGCTCCAATTGCTTACAACGGAATGGATATCGGCCTTAATCCGACGACCCCAAAAACAGCAAAAGAGAAAGAATTATGA 633 42.97 MNVEVSENNLQPCFEEAELIKLPEEEAAHYHIDQINCKKRSRGEFGDHVQKGRNERSKKAQKLTSSTNTTEEDGNAGLSRQSTSTYCSEDESNASLDQNGGANNSRSSLNGANKSRASRGSATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTAKEKEL* 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4913547 4914938 - CsaV3_7G007860.1 Csa07g00687 536250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00687 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 187 IPR036638 GO:0046983
Csa07g00687 210 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 1 198 - -
Csa07g00687 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Csa07g00687 210 Gene3D - 122 179 IPR036638 GO:0046983
Csa07g00687 210 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 198 - -
Csa07g00687 210 MobiDBLite consensus disorder prediction 43 128 - -
Csa07g00687 210 MobiDBLite consensus disorder prediction 61 125 - -
Csa07g00687 210 CDD bHLH_AtIND_like 122 184 - -
Csa07g00687 210 Pfam Helix-loop-helix DNA-binding domain 131 171 IPR011598 GO:0046983
Csa07g00687 210 SMART finulus 127 176 IPR011598 GO:0046983
Csa07g00687 210 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01584 Csa-Chr5:18711066 Csa07g00687 Csa-Chr7:4913547 3.04E-26 dispersed
Csa07g00687 Csa-Chr7:4913547 Csa01g01870 Csa-Chr1:15708212 6.05E-21 dispersed
Csa02g01899 Csa-Chr2:17969523 Csa07g00687 Csa-Chr7:4913547 1.28E-57 wgd
Csa04g00038 Csa-Chr4:228607 Csa07g00687 Csa-Chr7:4913547 2.67E-63 wgd
Csa04g02472 Csa-Chr4:24696914 Csa07g00687 Csa-Chr7:4913547 1.05E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32287 PF00010 HLH 2.90E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00687 - - csv:101212933 404.445