Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00689 ATGGCGACTTCTTCACTCTTCCATCTCTCTGCTCCGCCGTCGTTATCAATCGGCAGCTCAAAGTCGTCTTTCCTCTTTGGTACCCAGCTGCCTTTACCTCCCTCTTGTTCGAGAATCTCACGTCGCAGATATGTCCTATCTCCCCATGCCCAACAATCCATGGACCACATTCCTAAGCAGTTTAGAGAAGAAAATCTGAAAGATGGATTGATTGAGAACTACAAGAATGTTCCTCAGTATCTTTATGGCCTTACGCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCCGTGCAGCGACAGTCAGAATTAGTTAATGAGGAAAAGATATCATCTGCCTACAACTACTTGAATCATGGAGGAATGTGGAGTCTAACTGGCATGGATGGGAAGGGTCCAGATAAATATAGTATGAGCGTTAACATGTATCGTGGGGGAGGAGGTGGACGACCTCGATCATCTCCTCCTGATTTGCCCACTTTGCTCTTAGATGCTCGTATAATCTATTTGGGCATGCCTATTGTACCGGCAGTGACCGAGCTTATTGTTGCTCAGTTTATGTGGCTAGATTATGACAACCCGACAAAGCCCATATATCTCTACATAAACTCTTCTGGGACTCAGGATGAGAATAGGGAGCTTGTTGGATCTGAAACTGAAGCATATGCTATTGCAGATATGATGTCTTACTGCAAATCGGATGTCTATACCATTAACCTTGCGATGGCATATGGTCAAGCGGCAATGCTTTTGTCACTTGGAACCAAGGGTTACCGTGCTCTCCAGCCTAACGCTTCCACTAAACTATATCTCCCTAAAGTAAATAATTCAAGTGGGTCGGCCATAGATATGTGGATTAAGGCTAAAGAACTCGATGCCAACACCGAGTACTATCTCGAGCTACTAGCTAAAGGAATTGGTAAGCCCAAGGAAGAGATTAATAAAGATATCCAACTATCCAAATACTTCAAACCACAAGAAGCTATTGACTACGGCATTGCAGACAAGATTATCAAACCTGAAGATCCTGCCTATGAAAAAAAGAATTACGATGAGATGCTTTCACAGTCGAAAGCTGCAAATGCGAGGAGAGGACGAGGAGTCAATCCACAAGCGGCGCCAACTGGGTCCAGTTGGCGATAA 1146 44.24 MATSSLFHLSAPPSLSIGSSKSSFLFGTQLPLPPSCSRISRRRYVLSPHAQQSMDHIPKQFREENLKDGLIENYKNVPQYLYGLTPSQMDMFMTEDNPVQRQSELVNEEKISSAYNYLNHGGMWSLTGMDGKGPDKYSMSVNMYRGGGGGRPRSSPPDLPTLLLDARIIYLGMPIVPAVTELIVAQFMWLDYDNPTKPIYLYINSSGTQDENRELVGSETEAYAIADMMSYCKSDVYTINLAMAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLELLAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAANARRGRGVNPQAAPTGSSWR* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4936349 4941454 - CsaV3_7G007880.1 Csa07g00689 536252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00689 381 MobiDBLite consensus disorder prediction 349 381 - -
Csa07g00689 381 PRINTS Clp protease catalytic subunit P signature 158 173 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa07g00689 381 PRINTS Clp protease catalytic subunit P signature 198 218 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa07g00689 381 PRINTS Clp protease catalytic subunit P signature 238 255 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa07g00689 381 PRINTS Clp protease catalytic subunit P signature 317 336 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa07g00689 381 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 46 366 - -
Csa07g00689 381 CDD S14_ClpP_2 158 338 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa07g00689 381 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 46 366 IPR023562 -
Csa07g00689 381 Gene3D - 139 344 - -
Csa07g00689 381 Pfam Clp protease 161 341 IPR023562 -
Csa07g00689 381 SUPERFAMILY ClpP/crotonase 155 343 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00689 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101216144 728.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00458 Csa-Chr2:3250207 Csa07g00689 Csa-Chr7:4936349 5.15E-40 dispersed
Csa03g00230 Csa-Chr3:1844366 Csa07g00689 Csa-Chr7:4936349 4.82E-47 dispersed
Csa05g00366 Csa-Chr5:2356303 Csa07g00689 Csa-Chr7:4936349 3.36E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g695 Blo02g00932 . . Bda08g00678 . . Bma05g00652 . . Cmo11g01416 . . . . . Cpe04g00324 . . . . . . . . . . . . . . . . . . . . Csa07g00689 . Cme01g00116 . . . . . Bpe05g00474 . . . . . Cma11g01702 . Car11g01140 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011358 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00689 Csa_Chr07 FPKM 12.646283 12.317652 2.452629 1.949781 10.480227 8.782142 9.269104 24.523554 24.195957 21.188982