Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00697 ATGACGAGCGCTTCGGAGCTGTTTTATTGTCGGAGGTATAGATTTGGTCGCACTGACTCTGACTTGGGCCTTGATTCTGAGCCTCCCGATCGGCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGACTTGAACTCCTGTGGCGATTTCCGGCGTTCCTCGTTGCAAGAACGTCGTCAATCTCCTCGGTTTTTTAACCCTCTTTCCGTTGATCGATCACCTGCACAGTCTGACTCAGCTACGAGCGTTGCTTCTAGAAATAATATCAATGGAAATACTCAGAATAGCTTGAGGTCTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCTGTTTTACTTGCTAGAGAAAGGCTTCTCGAGAGATTGAGGGGTGCCTCGTCACCGACGACCAGAAACGCTCTTGTTGAAGCATCAAATGGAAATCCAGAAACCACGACAAGTCGATCACAGAGGATATCCCTCGTCGATGCTGACAGGATGCGGTTAGTAGCTGTACCTAGCAAGAGGCCCCCTGGTCTTTCACAGGATGCAATCAACCGCTTACAACTTGAGGTTTTTATCAATACAGATCATATCATCAACGACGGCGTGATGACAATAACATCAACAGACTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCTTGTGAGCACAAATTTCACCATCCTTGCCTGGACCGATGGATTAGAACTTGTGGAGAATGTCCATATTGTCGACAACATATCGCCATCAACTAA 777 46.98 MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSSLQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLARERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLSQDAINRLQLEVFINTDHIINDGVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLDRWIRTCGECPYCRQHIAIN* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4987024 4989843 + CsaV3_7G007960.1 Csa07g00697 536260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00697 258 MobiDBLite consensus disorder prediction 135 155 - -
Csa07g00697 258 CDD RING-H2_PA-TM-RING 210 252 - -
Csa07g00697 258 PANTHER SI:CH211-59O9.10 151 257 - -
Csa07g00697 258 PANTHER SI:CH211-59O9.10 1 156 - -
Csa07g00697 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 156 - -
Csa07g00697 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 151 257 - -
Csa07g00697 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 257 IPR013083 -
Csa07g00697 258 SMART ring_2 211 251 IPR001841 -
Csa07g00697 258 MobiDBLite consensus disorder prediction 61 112 - -
Csa07g00697 258 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Csa07g00697 258 Pfam Ring finger domain 210 252 IPR001841 -
Csa07g00697 258 MobiDBLite consensus disorder prediction 65 109 - -
Csa07g00697 258 SUPERFAMILY RING/U-box 210 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00697 - - - csv:101217568 503.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00697 Csa-Chr7:4987024 Csa04g02600 Csa-Chr4:25481803 9.27E-12 dispersed
Csa07g00697 Csa-Chr7:4987024 Csa02g02174 Csa-Chr2:19570529 2.82E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g673 . . . . . . . . . Cmo11g01410 . . . . . Cpe04g00318 . . . . . . . . Cla02g00669 Cam02g0703 Cec02g0717 Cco02g0738 Clacu02g0711 Cmu02g0706 Cre02g1021 Cone12ag1054 . Cone3ag1017 Cone10ag1034 Lsi03g00564 Csa07g00697 . Cme01g00109 . . . . . . . . . . . Cma11g01708 . . . . . . . . . . . . . . . . . . . . . Chy01g00119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012540 0 0 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00697 Csa_Chr07 FPKM 7.707247 0.0 13.966931 11.70048 10.63232 13.825488 10.130357 19.587406 18.540272 24.813868