Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00700 ATGGCTTTCCTCTCCACCTTCATCGCCGTCAAACCGTCGCTCCTCGTCGTCAAACCCTCCCCCACCACCTCCTCCTCCAACCTCAAGCATCTCAATCAACTCCCTCTCCCTGATTTGCGCTTCCCCCGCACTGTTACCTTCGCTTTAGCGTCCAAGCAGGCCACTGCCCCTAGCCGGGAGCCCCGTGGCATCACGAAGCCCAGGAAAATTTCACCGGAGTTGCAAGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACTCAAGCTCTTAAGGTCATTTGGGCTTACATTAAAGAAAATAATCTTCAGAAACCAAGCAACAAGAAAGTCATAGCTTGCGACGAGAAACTGAAGAAGATATTTGGAGGGAAAGATGAGGTTGGATTTCTGGAGATTGCAGGTTTAATAAGTCCACACTTTCTATAA 423 50.59 MAFLSTFIAVKPSLLVVKPSPTTSSSNLKHLNQLPLPDLRFPRTVTFALASKQATAPSREPRGITKPRKISPELQALVGAPEISRTQALKVIWAYIKENNLQKPSNKKVIACDEKLKKIFGGKDEVGFLEIAGLISPHFL* 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5001905 5003954 - CsaV3_7G007990.1 Csa07g00700 536263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00700 140 SMART swib_2 64 140 IPR019835 -
Csa07g00700 140 PANTHER EXPRESSED PROTEIN-RELATED 15 140 - -
Csa07g00700 140 CDD SWIB-MDM2_like 68 139 - -
Csa07g00700 140 SUPERFAMILY SWIB/MDM2 domain 60 139 IPR036885 -
Csa07g00700 140 Pfam SWIB/MDM2 domain 66 139 IPR003121 -
Csa07g00700 140 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 15 140 - -
Csa07g00700 140 Gene3D SWIB/MDM2 domain 58 140 IPR036885 -
Csa07g00700 140 ProSiteProfiles SWIB/MDM2 domain profile. 63 140 IPR003121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00700 - - - csv:101217337 276.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00990 Csa-Chr3:8029339 Csa07g00700 Csa-Chr7:5001905 3.64E-23 dispersed
Csa04g02058 Csa-Chr4:20885197 Csa07g00700 Csa-Chr7:5001905 2.30E-17 dispersed
Csa07g00584 Csa-Chr7:4240339 Csa07g00700 Csa-Chr7:5001905 5.10E-08 dispersed
Csa07g00700 Csa-Chr7:5001905 Csa07g00991 Csa-Chr7:8802671 6.70E-07 dispersed
Csa07g00700 Csa-Chr7:5001905 Csa06g00638 Csa-Chr6:5327938 8.72E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g668 Blo02g00939 Blo03g00081 . . Bpe07g00266 . . Bma12g00272 . Cmo11g01405 . . . . . Cpe04g00313 Cpe15g00452 . . . . . . . . . . . . . . Cone12ag1057 Cone8ag1091 . . . Csa07g00700 . Cme01g00106 . . . . . Bpe05g00483 . . . . . Cma11g01711 Cma19g00564 Car11g01130 Car19g00424 . . . . . . . . . . . . . . . . . . Chy01g00116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007982 0 1 2 2 2 1 2 1 1 1 0 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 0 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32289 PF02201 SWIB 3.30E-29 No_clan Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00700 Csa_Chr07 FPKM 6.045134 6.623193 0.600294 1.098122 2.613214 3.109532 1.618535 0.0 0.0 0.149008