Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00705 ATGGCGCACTTTTATCTAAAATTTCGCGACGAACTCCTACTGAGGCGGCCGCTTAGATTTGAAATTCATGAAAATGGCGGCATTTCTCCCTCCTCATCCCCCTCTATTTCACCACAACTCCATTCTTCCACCAATGGATTCTCCGGCATTTACTATCCCCTCCTTCCTTTCCCTTCTCCGGCTAACTTCGCAACTTCCACATTCTCCCTCCTCCCCTTCGGAATCAGATTATTCCCGTCTCCCATGGACTCGTCGGAGTACTACAAACCATCCTTCCCAACCTCCAAGAAACGCGACTCGGAGGAACACTCTTTGCAGCAGGCTACTGCCAATAAGAGACCCGTGCTTGGCGAGATCACTAACTCGTTCATCTTCAGTTCGAGTCAGTGCTCCTTTTCTGACCAGGAGATGGCGGATAAGGATCTGGACAAGGAGGAACTTCCTGAAGTACGGTCTGTTGATTGTCCCGAGAAATCTGGCTCGTCGTTGGGCATTTATAACCACCTTCGATCTCTCGAGATGGAATTAAACATGAAGTTCCTACCCAACAACATAGAAAAGGCTCGTAATGATGATTCCTGTTCAACTTTCACTCGTTGGCGAGAAATTCTAGTGGATTGGTTAGTAGAGGTTGCTGAGGAATACAAGCTTGTATCAGACACCCTATATCTCACCATATCACATGTTGACAGATACTTATCCTGGCATGTTGTTGACAAAAGCAAGCTACAACTTATTGGTGTTTGTTGCATGCTAATTGCATCGAAGCATGAAGAGATCAGTCCTCCACATGTTGAAGATTTCTGTTATATAACAGATAACACTTATACCAAAGAACAGGTACTGAATATGGAGAGAGAAGTACACAGATTCTTGGCATGTGAAGGTGCTCCCACCGTAAAAGTTTTCCTCAGAATATTTACGAAAGTTTCTTTAGAAAATTGGAAGGCTCCAGATTTGCAATTTGAGTTGTTGTGTTGTTATCTTGCGGAGCTAAGTTTGTTAGATCACCGTTGTGCACAAATATTACCTTCAAAAGTCGCTGCATCAGCCATTTTTCTTTCTAGATTCACAATCCAACCAGAGGAACATCCTTGGTGTTTAGCACTACAACGTTACTCCGGTTACAGGGCATCTGAACTAAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAAGGAAGCTCTTTACTAGCAATCAGAGAGAAGTACAAGGAGAACAAGTTCAAGTGTGTGGCAGAGTTATGTTCACCCTCGGAAATTCCCGCAGATTATTTTGAGGACATTGATCAGCAATCATTCAACAGGTTCTTAAGAACTTAA 1332 43.24 MAHFYLKFRDELLLRRPLRFEIHENGGISPSSSPSISPQLHSSTNGFSGIYYPLLPFPSPANFATSTFSLLPFGIRLFPSPMDSSEYYKPSFPTSKKRDSEEHSLQQATANKRPVLGEITNSFIFSSSQCSFSDQEMADKDLDKEELPEVRSVDCPEKSGSSLGIYNHLRSLEMELNMKFLPNNIEKARNDDSCSTFTRWREILVDWLVEVAEEYKLVSDTLYLTISHVDRYLSWHVVDKSKLQLIGVCCMLIASKHEEISPPHVEDFCYITDNTYTKEQVLNMEREVHRFLACEGAPTVKVFLRIFTKVSLENWKAPDLQFELLCCYLAELSLLDHRCAQILPSKVAASAIFLSRFTIQPEEHPWCLALQRYSGYRASELKECILAIHDLQLNRKGSSLLAIREKYKENKFKCVAELCSPSEIPADYFEDIDQQSFNRFLRT* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5032351 5035656 + CsaV3_7G008040.1 Csa07g00705 536268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00705 443 SMART Cyclin_C_2 298 421 IPR004367 -
Csa07g00705 443 Gene3D - 178 296 - -
Csa07g00705 443 PANTHER CYCLINS 106 431 IPR039361 -
Csa07g00705 443 Pfam Cyclin, N-terminal domain 172 292 IPR006671 -
Csa07g00705 443 Gene3D - 165 417 - -
Csa07g00705 443 SMART cyclin_7 206 290 IPR013763 -
Csa07g00705 443 SMART cyclin_7 302 390 IPR013763 -
Csa07g00705 443 MobiDBLite consensus disorder prediction 92 106 - -
Csa07g00705 443 MobiDBLite consensus disorder prediction 89 111 - -
Csa07g00705 443 CDD CYCLIN 298 389 IPR013763 -
Csa07g00705 443 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 374 443 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa07g00705 443 Pfam Cyclin, C-terminal domain 298 420 IPR004367 -
Csa07g00705 443 CDD CYCLIN 201 289 IPR013763 -
Csa07g00705 443 PANTHER CYCLIN-A3-1-LIKE 106 431 - -
Csa07g00705 443 SUPERFAMILY Cyclin-like 298 422 IPR036915 -
Csa07g00705 443 SUPERFAMILY Cyclin-like 179 293 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02128 Csa-Chr6:19014362 Csa07g00705 Csa-Chr7:5032351 2.53E-72 dispersed
Csa07g00705 Csa-Chr7:5032351 Csa07g02205 Csa-Chr7:20738344 1.87E-79 dispersed
Csa02g01916 Csa-Chr2:18053116 Csa07g00705 Csa-Chr7:5032351 1.31E-93 wgd
Csa04g02456 Csa-Chr4:24614388 Csa07g00705 Csa-Chr7:5032351 1.70E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00705 K06627 - csv:101213896 879.011