Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00711 ATGAATTCTGATTCGTCTCGTTCGGCTAATTCCTCCGCCCAGAAATCCAAGCGAATTCGTGACAATTCATCTCCGTCGAACCCTTCCGGTGGTGGTGGCAACAAGAGGAAACGGAGCAACCAGAAAACCCTAGGTGTCGCATGGGGAGCCAATTCCATTTCATCCTCTCGCAAATCTCCCTTTTCAGATTTTGGAAGTTATATGGTAGAAAAGAACAGGAAACTGCACAATCAGTTTAATCTTGATGCTTCAAGTGCTTCACATAGTGGTGTGAACTCAGGAAATCAAATATTTCAGGGTGTGTCTATCTTTGTTGACGGTTTCACGATTCCTTCCAGTCAGGAATTGCGGGGTTATATGTTGAAGTACGGTGGAAGATTTGAGAATTATTTTTCAAGACGTAGTGTTTCTCATATTATTTGCAGTAATTTACCGGACAGTAAAATAAAGAATCTCAGGTCATTCAGCCGTGGACTCCCAGTTGTAAAACCCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGCTGGGTTCCTTACCAACTTGATCAGCTTGTAAATAATCAACCAAGATTATCAGAATTCTTTTCTATGAAAAAAGGTCCAACGGTGGAGAAACCCAAAATTTGCTTGACTTCTGAAAAGAAATATGAAACAGAAGATTCACTGTCCCCGGTGGCCATGAATTTGAAGGATACCACTTTGTCGGAAGTGAATGAATCGGTAGGATATAGAGCAGAGTTGCATTCTGACTCTGAAATGAATCTTCAATATAATGCAGATGCTAAACTGAATGAGACGTCAAGTGATGATTTAGAGGCTGCCAAACTGAAGGATACAAGTATATCTGATGTAGATGTATCTATTGAATATAAACCACAATTTTGTGGAAGTTTTGAGATGCTCCCTCAGAAGGATGCTGATGTAGAAGTACAGAAAGGACCAAGCAGTGAAAAATATAATTATGCAGGTGAAGAACCAGGAATTGATGATGTGGGTCAGAGCAGTGAAGAAAATATATCTAGTTTTCATGGTTTGTCTGCATCAACACACAATGGTAGCACCAATAGTGATGGATCATCAAGTTCTATGGCGGCTGGGTCTTCTAAGCTGCAGCATTCAACACTAGAGAATCCAGATTTTGTGGAAAATTATTTCAAGAAGTCAAGGCTTCATTTCATTGGAACTTGGAGAAATCGTTACTATAAGCGTTTTCCACGGTTAGCTAATGGATCCAATTCTGTGACTTCTCCTATCAATGGTTCTTCCCACGATCAGTCTGCCACTATTATCCATGTTGACATGGACTGCTTTTTTGTCTCAGTGGTTATTCGAAACATTCCAAAATTTAAGGATAGGCCTGTTGCTGTATGCCACTCAGATAATCCTAAAGGAACTGCAGAAATTTCATCTGCAAACTACCCTGCTCGAAGTTATGGAGTCAAAGCAGGAATGTTTGTTAGAGATGCAAAAGCTCTTTGTCCCCATCTTGTTATTTTTCCATATGACTTCAAGTCCTACGAGGGGGTAGCCGATCAGTTCTATGATATATTGCACAAGCATTGTGAGAAAGTGCAGGCTGTAAGTTGCGATGAAGCATTTTTGGATATCTCGGGCACAAACAATGTAGATCCCGAGGTATTGGCTTCAAAAATAAGAAAAGAAATCTTTGATACAACAGGATGTACTGCAAGTGCTGGAATAGCTACAAATATGCTAATGGCTCGCCTTGCCACTAAAACTGCAAAACCGGATGGTCAGTGTTACATTCCTTTAGAGAAGGTTGATGATTATTTAAATCCGCTTCCTATCAAGGACCTTCCTGGAATAGGGCATGCCTTAGAGGAGAAGCTGAAGAAAAGAAGTGTTTTGACTTGTAGTCAGCTGCGTATGTTATCCAAGGACTCTCTTCAAAAAGACTTTGGATTAAAAACGGGGGAAATGTTATGGAACTATAGTCGAGGGGTGGACAATCGTGCAGTTGGGTTGATCCAGGAAAGCAAATCCATAGGAGCTGAAGTGAATTGGGGTGTTAGGTTCAAGGACTTCAAAGATTGTCAATGCTTTCTCTTGAACCTCTGTAAGGAGGTTTCATTACGGTTGAATGGATGTGGAGTGCAGGGACGCACCTTTACCCTCAAGATAAAAAAACGGAGAAAAAATGCTGATGAACCCACAAAGTATATGGGCTGTGGAGATTGTGAAAACTTGAGCCATTCATTAACGGTTCCTGTTGCCACTGATGATCTGGAAATTCTTCAAAGAATAGTAAAGCAACTTTTTGGGTTTTTTGTCATAGATGTCAAAGAAATTCGAGGTATTGGCTTACAAGTTTCGAAACTTCAAAATGTGGATATCTCTAGGCAAGGGACGAAAAGAAATTCTTTGGATTCATGGCTCAGTTCATCTGCAACTACAAATGTAGAAAATGTCATTGGTCCTTCGGTAAAGGAAGTGGCTAATATAGATAATGAGAAACAGAGTAACTCTGGAACTTTAGATCAGTTATCTGCTGATCCTATAAGCCATCTGATTCAGATGGAGAACAACCGGCACCACAGTGAAGCTTTGAACCCGGTTTCACCTCCACCTCTTTGCAATCTGGATATTGGAGTTATAAGGAGCTTACCTCCTGAACTGTTTTCAGAGTTAAATGAAATTTACGGTGGGAAACTAATTGATCTCCTATCTAAGAGCAGGGACAAAAATGAAGTTTTCTCTTCTTCTATAAGGGTTCCGTCTCAAGGATCAGGAGGTGATGGACTTACTTTATCGGATATCCAAGGAAACAAAGTACAGTCCGAAAATAAGCATATTGTTGATCGTTCACCACCTGCACAGATTTCTAGGGAAGGATTGTACACTATGATGGCTCCTATTAGCACCTCTGGATCTCATAGAATTGATTTACTACCTTCATCTCTAAGTCAAGTAGATCCATCAGTATTACAAGAGTTACCTGAACCACTGAGGGATGACATACTTAAGCAACTCCCAGCTCACAGGGGAAATGAGCTTTCTTTGGAACACGCAATCAAAGATCAGCGGGAATCAGGCAGTGGTGTTGAGAATACATCTGGCTCAGTGGATCCTTTGATGGAAAACGATCTTTGGTCTGGGAACCCACCTCTATGGGTTGATAAATTTAAAGCCAGCAATTGCTTGATATTAGAACTTTTTGCAGAGATCTATACAGAATCCGGATTACCGGGAAATCTATATGAGATTTTGCTAAGGACTTCATCTCAATCTTGGCATCCTTCAGCTGCAGATTCTGATGGTTGGGATGGTGCTATCTATGGCTTATGTGAACTTCTAAAGCAGTACTTTAAGTTAAAGATAGAGTTGGACATCGAGGAGACCTATGTTTGTTTTCGTCTGCTTAAGAGGTTAGCAATGAAGTCCCAGCTGTTTTTGGAAGTCTTCAACATTATTGATCCATACCTTCAGGGGGCAGTCAATGAAATTTACGGCGGAAGTTTGAAGGTGTAG 3498 40.59 MNSDSSRSANSSAQKSKRIRDNSSPSNPSGGGGNKRKRSNQKTLGVAWGANSISSSRKSPFSDFGSYMVEKNRKLHNQFNLDASSASHSGVNSGNQIFQGVSIFVDGFTIPSSQELRGYMLKYGGRFENYFSRRSVSHIICSNLPDSKIKNLRSFSRGLPVVKPTWILDSVASNKLLSWVPYQLDQLVNNQPRLSEFFSMKKGPTVEKPKICLTSEKKYETEDSLSPVAMNLKDTTLSEVNESVGYRAELHSDSEMNLQYNADAKLNETSSDDLEAAKLKDTSISDVDVSIEYKPQFCGSFEMLPQKDADVEVQKGPSSEKYNYAGEEPGIDDVGQSSEENISSFHGLSASTHNGSTNSDGSSSSMAAGSSKLQHSTLENPDFVENYFKKSRLHFIGTWRNRYYKRFPRLANGSNSVTSPINGSSHDQSATIIHVDMDCFFVSVVIRNIPKFKDRPVAVCHSDNPKGTAEISSANYPARSYGVKAGMFVRDAKALCPHLVIFPYDFKSYEGVADQFYDILHKHCEKVQAVSCDEAFLDISGTNNVDPEVLASKIRKEIFDTTGCTASAGIATNMLMARLATKTAKPDGQCYIPLEKVDDYLNPLPIKDLPGIGHALEEKLKKRSVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGVDNRAVGLIQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRLNGCGVQGRTFTLKIKKRRKNADEPTKYMGCGDCENLSHSLTVPVATDDLEILQRIVKQLFGFFVIDVKEIRGIGLQVSKLQNVDISRQGTKRNSLDSWLSSSATTNVENVIGPSVKEVANIDNEKQSNSGTLDQLSADPISHLIQMENNRHHSEALNPVSPPPLCNLDIGVIRSLPPELFSELNEIYGGKLIDLLSKSRDKNEVFSSSIRVPSQGSGGDGLTLSDIQGNKVQSENKHIVDRSPPAQISREGLYTMMAPISTSGSHRIDLLPSSLSQVDPSVLQELPEPLRDDILKQLPAHRGNELSLEHAIKDQRESGSGVENTSGSVDPLMENDLWSGNPPLWVDKFKASNCLILELFAEIYTESGLPGNLYEILLRTSSQSWHPSAADSDGWDGAIYGLCELLKQYFKLKIELDIEETYVCFRLLKRLAMKSQLFLEVFNIIDPYLQGAVNEIYGGSLKV* 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5065494 5077859 - CsaV3_7G008100.1 Csa07g00711 536274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00711 1165 Pfam impB/mucB/samB family 435 582 IPR001126 GO:0006281
Csa07g00711 1165 Gene3D - 668 791 IPR036775 GO:0003684|GO:0006281
Csa07g00711 1165 Gene3D - 604 658 - -
Csa07g00711 1165 MobiDBLite consensus disorder prediction 311 375 - -
Csa07g00711 1165 SUPERFAMILY DNA/RNA polymerases 425 663 IPR043502 -
Csa07g00711 1165 PIRSF REV1 35 1157 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Csa07g00711 1165 Gene3D - 432 592 IPR043128 -
Csa07g00711 1165 ProSiteProfiles BRCT domain profile. 93 184 IPR001357 -
Csa07g00711 1165 SUPERFAMILY BRCT domain 47 186 IPR036420 -
Csa07g00711 1165 Gene3D BRCT domain 89 184 IPR036420 -
Csa07g00711 1165 CDD BRCT_Rev1 97 184 - -
Csa07g00711 1165 CDD PolY_Rev1 383 783 - -
Csa07g00711 1165 Pfam impB/mucB/samB family C-terminal domain 669 788 IPR017961 GO:0003684|GO:0006281
Csa07g00711 1165 Gene3D - 381 415 - -
Csa07g00711 1165 SMART BRCT_7 95 174 IPR001357 -
Csa07g00711 1165 PANTHER DNA REPAIR PROTEIN REV1 35 1161 - -
Csa07g00711 1165 MobiDBLite consensus disorder prediction 336 375 - -
Csa07g00711 1165 ProSiteProfiles UmuC domain profile. 432 613 IPR001126 GO:0006281
Csa07g00711 1165 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 668 781 IPR036775 GO:0003684|GO:0006281
Csa07g00711 1165 MobiDBLite consensus disorder prediction 1 59 - -
Csa07g00711 1165 Pfam BRCT domain, a BRCA1 C-terminus domain 95 182 IPR001357 -
Csa07g00711 1165 Pfam IMS family HHH motif 596 622 IPR024728 -
Csa07g00711 1165 Gene3D - 449 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00711 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] - csv:101214381 2272.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03911 Csa-Chr6:30922246 Csa07g00711 Csa-Chr7:5065494 9.02E-26 dispersed
Csa07g00682 Csa-Chr7:4882370 Csa07g00711 Csa-Chr7:5065494 3.90E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00711 Csa_Chr07 FPKM 24.604036 23.752647 6.240633 6.856699 8.237473 6.790431 6.876437 11.890969 11.72457 12.413139