Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00718 ATGCCGCAGTTTGAGATCACCAGGTTTGTGATGTGGCTAAAGATATCAGAATCCCCTGTTCTCTGGGTTCAGTCTTGCTCCGTTTTCTCTACTTATTATCATTACTCACGTGAATTTGTGGATTTTCCTTTTGAATTTGATCCTTATTGTGATGTTCAATTTCCATCGCTTCCATTACTGAAGAATGACGAAATTTCAAGCTTCTTGCACCCTCATGGGGTGTATAAGGCGATTGGATGGTCGATTTTGCAGCAGTTTCATAACGTGTCGATACCATTTTGTTTTTTAAAGGATACATTTGAGGAACTTGAGAGAGATGTTATTAAGAATATGTCGACGATTTGTCCTATTAAGCCGATTGGTCCTCTTTTCAAGACGCTAAAAATTTCCAACAACAACAAAAAGGCGAATGTCTCCGGCGATTTCTTGAAAGAGCTATGA 441 39.0 MPQFEITRFVMWLKISESPVLWVQSCSVFSTYYHYSREFVDFPFEFDPYCDVQFPSLPLLKNDEISSFLHPHGVYKAIGWSILQQFHNVSIPFCFLKDTFEELERDVIKNMSTICPIKPIGPLFKTLKISNNNKKANVSGDFLKEL* 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5123435 5123964 - CsaV3_7G008170.1 Csa07g00718 536281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00718 146 Gene3D Glycogen Phosphorylase B; 17 143 - -
Csa07g00718 146 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 20 129 - -
Csa07g00718 146 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 18 134 - -
Csa07g00718 146 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 18 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00718 - - K23279 csv:101215099 220.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00718 Csa-Chr7:5123435 Csa07g00720 Csa-Chr7:5131184 1.19E-33 dispersed
Csa07g00717 Csa-Chr7:5111767 Csa07g00718 Csa-Chr7:5123435 1.33E-69 tandem
Csa07g00718 Csa-Chr7:5123435 Csa07g00719 Csa-Chr7:5126758 7.04E-39 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g633 . . . . . . Bma05g00532 . Cmo19g00593 Cmo11g01394 . . . . . . Cpe15g00465 Bhi05g01106 . . . . . . Cla02g00640 . . . . . . . . . . Lsi03g00535 Csa07g00718 . Cme01g00089 . . . . . . . . . . . Cma11g01721 Cma19g00578 Car11g01120 Car19g00438 . . . . . . . . . . . . . . . . . . Chy01g00097 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000463 3 5 1 1 1 4 5 5 5 4 5 5 4 3 3 5 5 4 4 5 4 3 4 5 5 5 3 5 4 3 118
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00718 Csa_Chr07 FPKM 55.630249 66.223167 4.279074 5.06619 9.684671 9.52535 8.585264 0.800304 1.125559 1.036265