Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00728 ATGATTCTCCCTTCTTCCTTCCTTTCTCTCCTCCTCCTCCTCTCTCTTTCCTCCTCCGTTCAATCTCTCACCTCCCCTTCTGATGTCTTCGCCCTCAAAGCCTTTAAATCCGCCATTAAACCTTCCTCCATTCCCCCTTGGTCCTGTTTAGCTTCTTGGAATTTCTCCACCGATCCCTGCGCCCTCCCTCGCCGCACCTTCTTCTCTTGCGGCCTCCTCTGCAACTCCGCTGCCACTCGTGTCACCCAACTCACCCTCGACCCTGCTGGCTACTCCGGTACTCTTTCTCCACTTATCTCCAAACTTACTTACTTAACTGTTCTTGATCTCTCTGATAATTCCTTCTCTGGTTTCATCCCCTCTGCAATTTCCTCTCTTTCTAATCTCCAAATCCTCACTCTCCGATCCAATTCCTTTTCTGGATCCATTCCCCCTTCTATTTCCAATCTCAAATCACTTGAATCTTTGGACTTTTCTCATAATTCCCTCACTGGGAATCTCCCCAAATCTCTGCATTTTCTCTCTCTTTTAAGACGTCTCGATCTCAGCTTCAATCAACTCACCGGCTCTCTTCCTAAACTCCCACCTAACTTACTCGAACTCGCCTTAAAACGAAATTCCCTTTCTGGGTATTTGGATAAATCGTCTTTCTCCGACTCCACTCAATTGGAAGTTATCGAACTAAGTGAGAATTACCTCGCCGGAACCTTACCGTCTTGGTTCTTCCTCCTTCCCTCTCTTCAACAGATCAATCTCGCTAATAATAGTTTAACGCATATCGAGATCTCCCCTGCCACCGCTGGTGGTAGCGATCTCGTTGCCATCGATTTGGGGTTCAACAGAATCGAAGGGAACGTGCCGGTGAATTTCGTCACCTATCCGGCGTTGTCGTCGTTGTCGCTACGGTACAATCGGTTACGTGGCGTGATCCCATTAGAGTTCAGTAAGAAGAAAACAATGAAGAGATTATACTTGGATGGGAACTTCTTGACCGGGAAGCCACCGGCGGCATTCTTCTCAGGCGGTGAAGATCCAGTTTTCGGTAGCTTGGGGGATAACTGTCTGCAGGGATGTCCACAGTCATCTCAGCTGTGCGCTCCGTCGCAGAAGCCGAATGCGGTTTGCAAAGAAGCGTACGGAAACGGGAGGGGAAGAGGAAAACCGATGACTTGA 1173 48.68 MILPSSFLSLLLLLSLSSSVQSLTSPSDVFALKAFKSAIKPSSIPPWSCLASWNFSTDPCALPRRTFFSCGLLCNSAATRVTQLTLDPAGYSGTLSPLISKLTYLTVLDLSDNSFSGFIPSAISSLSNLQILTLRSNSFSGSIPPSISNLKSLESLDFSHNSLTGNLPKSLHFLSLLRRLDLSFNQLTGSLPKLPPNLLELALKRNSLSGYLDKSSFSDSTQLEVIELSENYLAGTLPSWFFLLPSLQQINLANNSLTHIEISPATAGGSDLVAIDLGFNRIEGNVPVNFVTYPALSSLSLRYNRLRGVIPLEFSKKKTMKRLYLDGNFLTGKPPAAFFSGGEDPVFGSLGDNCLQGCPQSSQLCAPSQKPNAVCKEAYGNGRGRGKPMT* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5166923 5168512 - CsaV3_7G008270.1 Csa07g00728 536291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00728 390 Pfam Leucine rich repeat N-terminal domain 26 60 IPR013210 -
Csa07g00728 390 Pfam Leucine rich repeat 196 257 IPR001611 GO:0005515
Csa07g00728 390 Gene3D Ribonuclease Inhibitor 195 361 IPR032675 -
Csa07g00728 390 Pfam Leucine Rich Repeat 321 338 IPR001611 GO:0005515
Csa07g00728 390 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Csa07g00728 390 Pfam Leucine Rich Repeat 105 126 IPR001611 GO:0005515
Csa07g00728 390 Pfam Leucine Rich Repeat 152 174 IPR001611 GO:0005515
Csa07g00728 390 SMART LRR_typ_2 244 269 IPR003591 -
Csa07g00728 390 SMART LRR_typ_2 174 201 IPR003591 -
Csa07g00728 390 SMART LRR_typ_2 102 125 IPR003591 -
Csa07g00728 390 SMART LRR_typ_2 126 149 IPR003591 -
Csa07g00728 390 SMART LRR_typ_2 150 173 IPR003591 -
Csa07g00728 390 Gene3D Ribonuclease Inhibitor 24 194 IPR032675 -
Csa07g00728 390 SUPERFAMILY L domain-like 69 343 - -
Csa07g00728 390 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 6 382 - -
Csa07g00728 390 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 6 382 - -
Csa07g00728 390 PRINTS Leucine-rich repeat signature 105 118 - -
Csa07g00728 390 PRINTS Leucine-rich repeat signature 150 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00728 - - - csv:101221363 724.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00728 Csa-Chr7:5166923 Csa02g01913 Csa-Chr2:18039973 1.28E-14 dispersed
Csa07g00728 Csa-Chr7:5166923 Csa04g00527 Csa-Chr4:3473558 7.33E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00728 Csa_Chr07 FPKM 0.458667 0.886469 0.491719 0.568076 15.197767 9.870975 10.989073 0.0 0.0 0.0