Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00732 ATGGCTTTACACTCAAACAAACACACAACGACTCAACGCCTCCATAACTCACTCTTCTTCTTCGATTTACTCCATTGCACTGAACAACAACACCATCAAACAGAGCTTCCCATTTTCCTTAACAATGGCGCCACCACCACTACCAACTTCCCCCTTTCCCATTTCCTCATTTCCGAAGACGAAGAGCTCGCTTATTTGTTATCCAAAGAAAAAGACCAGAATCTCCAACACCATGCTGTTTTGGAAACCTTGATTCAAACAGATAATGCTCTGTCTCTCGCTAGAACGGAGGTTATCGACTGGTTGCTTAAAGTTAATGCCTTTTATGGCTTCTCATCTCTTACAGCTCTTTTAGCTATTAATTACCTTGATAGAATCCTCTCTGGGCCTCATTTTCAAAGAGATAAGCCATGGATGCTTCAGCTTCTTGCTGTAACTTGCATCTCTTTAGCTGCTAAAATCGAAGAAATTCGTGTCCCTCTTCTTCTAGATCTCCAGGTGGAAGATTCCAAGTACATTTTTGAACCGAAAACGATACAGAGAATGGAGCTTTTGGTTCTTACTGCTCTACAATGGAAGATGCATCCAGTGACCCCTGTTTCATTTCTTGGTATCATAACAAAAGAGTTTGTAATGAAGAATCAATACATTCAAAAAGAGTTCCTTAGACGTTGCGAGCGTGTTCTTCTCTCTATCGTCTCAGATTCAAGATCGGTGGGGATTCTTCCTTCCGTAATGGCAGTTTCAGCAATGGTTAGTGTTGTTGAAGAGATGGGAAACTGTAATCCCTTAGAGGAGTTTCAAGATCACCTTCTTAATGCCCTCAAAATAAACAAGGGGAGAGTGAAGGAGTGTTGTAAAGTGATAATGGAGGCAAAAGCAAAAGGGTCAATGAAGAGGAAGCATGTGGAGGAGAAAGCAGAAACTGGAGAATCATCAGAAGTAGAAACAGAAGAAGAAGAAGAAGCAGAAGTAGGGAGTCCAAATGGAGTAATAGAGGCAAATTTCAGCTGTGAAAGCTCCAACGATTCGTGGGATATGGGGACGATTGTGTCAGCATCAACATTATATTCACATTTTTCTTCTTCTTCTTCTTCTAATTCTTCCAAAAGAATCAGACCCACTCGATGA 1131 41.11 MALHSNKHTTTQRLHNSLFFFDLLHCTEQQHHQTELPIFLNNGATTTTNFPLSHFLISEDEELAYLLSKEKDQNLQHHAVLETLIQTDNALSLARTEVIDWLLKVNAFYGFSSLTALLAINYLDRILSGPHFQRDKPWMLQLLAVTCISLAAKIEEIRVPLLLDLQVEDSKYIFEPKTIQRMELLVLTALQWKMHPVTPVSFLGIITKEFVMKNQYIQKEFLRRCERVLLSIVSDSRSVGILPSVMAVSAMVSVVEEMGNCNPLEEFQDHLLNALKINKGRVKECCKVIMEAKAKGSMKRKHVEEKAETGESSEVETEEEEEAEVGSPNGVIEANFSCESSNDSWDMGTIVSASTLYSHFSSSSSSNSSKRIRPTR* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5194238 5197055 - CsaV3_7G008310.1 Csa07g00732 536295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00732 376 MobiDBLite consensus disorder prediction 311 326 - -
Csa07g00732 376 Gene3D - 76 195 - -
Csa07g00732 376 Gene3D - 65 287 - -
Csa07g00732 376 SMART Cyclin_C_2 197 318 IPR004367 -
Csa07g00732 376 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Csa07g00732 376 Pfam Cyclin, C-terminal domain 197 317 IPR004367 -
Csa07g00732 376 CDD CYCLIN 95 187 IPR013763 -
Csa07g00732 376 SUPERFAMILY Cyclin-like 57 195 IPR036915 -
Csa07g00732 376 Pfam Cyclin, N-terminal domain 64 194 IPR006671 -
Csa07g00732 376 PANTHER CYCLINS 36 356 IPR039361 -
Csa07g00732 376 SMART cyclin_7 100 188 IPR013763 -
Csa07g00732 376 MobiDBLite consensus disorder prediction 298 335 - -
Csa07g00732 376 PANTHER CYCLIN-D3-1 36 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00732 K14505 CYCD3; cyclin D3, plant - csv:101222066 684.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03126 Csa-Chr6:26701732 Csa07g00732 Csa-Chr7:5194238 1.14E-44 dispersed
Csa04g01509 Csa-Chr4:14774898 Csa07g00732 Csa-Chr7:5194238 1.76E-24 transposed
Csa02g01926 Csa-Chr2:18094023 Csa07g00732 Csa-Chr7:5194238 1.19E-87 wgd
Csa03g01827 Csa-Chr3:14012615 Csa07g00732 Csa-Chr7:5194238 2.43E-90 wgd
Csa04g02445 Csa-Chr4:24557946 Csa07g00732 Csa-Chr7:5194238 1.11E-69 wgd
Csa06g02966 Csa-Chr6:25660299 Csa07g00732 Csa-Chr7:5194238 5.36E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g609 Blo02g00838 . . Bda08g00772 . . Bma05g00508 . Cmo19g00602 Cmo11g01386 . . . . . Cpe04g00298 Cpe15g00473 . . . . . . . Cla02g00627 Cam02g0660 Cec02g0664 Cco02g0687 Clacu02g0668 Cmu02g0662 Cre02g0981 . Cone8ag1114 . . Lsi03g00524 Csa07g00732 . Cme01g00076 . . Bda15g00846 Bda14g01452 . . Bma03g01357 . . Cmo04g00511 Cmo16g00370 Cma11g01728 Cma19g00585 Car11g01112 . Cpe14g00286 Cpe01g00427 . . . . . . . . . . . . . . . . Chy01g00082 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012026 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 3 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00732 Csa_Chr07 FPKM 0.798242 0.763093 1.569148 1.249602 2.022818 2.17067 2.884241 1.779768 1.935526 1.648471