Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00733 ATGTCGACATTTGCCATTCAGGGTCAACCTCTTGAAGTCACCGTTATTGGATGCACAAAGTTGAAAGATACAGAATGGATTTCAAGGCAGGATCCTTATGTGTTTCTTGAATATGGTAGTACAAAGTTTCGTACCACCACTTGCACAGATGGTGGTAGAAATCCAACATTCCAAGAGAAATTTGTTTTTTCTCTTATTGAAGGGCTAAGAGAGATTAATGTCACAGTTTGGAACAGCAATACAGTTACTTATGATGACTTCATTGGCAATGGAAAAATCCAATTGGCTAAAGTTCTAGCAGAAGGGTATGATGATAGCTCATGGTCACTTCAAACTAAAACTGGCAGACATGCTGGGGAAGTACGACTGATACTACATTTTGCAAATGCCAATAGACCTACATCAAGTTTTGCGCCCTCGGCACCACCATTTCATGTACCTACTCCACCCCAAGTCCCTGCATACATTACGATGCCCCCGCCGTCACCGGCACACCCAACAGCGTATCCTCCTCCTACTCCTACACCCTATGCATCATTCCAATCTCCCTATCCTTCTTACCCACCCAGCTCTGGAACATATCAAACATCCATGTATTCCTCCCCATATCCCTCTGGGTATCCTCCCACATCGTACCCCCCACCTCCCTCGGCTTATCCTCCCAATCCTTACCCACCACCTCCACAAGCCTCACCTTTCTATCCTCCAGGTCCTTACCCCGGAGTTTATCCCCCACCTCAGTATTGA 747 46.05 MSTFAIQGQPLEVTVIGCTKLKDTEWISRQDPYVFLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRHAGEVRLILHFANANRPTSSFAPSAPPFHVPTPPQVPAYITMPPPSPAHPTAYPPPTPTPYASFQSPYPSYPPSSGTYQTSMYSSPYPSGYPPTSYPPPPSAYPPNPYPPPPQASPFYPPGPYPGVYPPPQY* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5204455 5208181 - CsaV3_7G008320.1 Csa07g00733 536296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00733 248 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 129 IPR035892 -
Csa07g00733 248 SMART C2_3c 10 107 IPR000008 -
Csa07g00733 248 MobiDBLite consensus disorder prediction 156 175 - -
Csa07g00733 248 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 3 248 - -
Csa07g00733 248 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Csa07g00733 248 CDD C2 11 108 - -
Csa07g00733 248 PRINTS Proline rich extensin signature 141 153 - -
Csa07g00733 248 PRINTS Proline rich extensin signature 160 176 - -
Csa07g00733 248 PRINTS Proline rich extensin signature 202 214 - -
Csa07g00733 248 PRINTS Proline rich extensin signature 216 237 - -
Csa07g00733 248 MobiDBLite consensus disorder prediction 180 238 - -
Csa07g00733 248 Pfam C2 domain 11 106 IPR000008 -
Csa07g00733 248 MobiDBLite consensus disorder prediction 184 205 - -
Csa07g00733 248 MobiDBLite consensus disorder prediction 206 238 - -
Csa07g00733 248 Gene3D C2 domain 9 129 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00733 - - - csv:101217489 347.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00733 Csa-Chr7:5204455 Csa01g01522 Csa-Chr1:10892545 4.68E-07 dispersed
Csa05g00309 Csa-Chr5:1943199 Csa07g00733 Csa-Chr7:5204455 1.14E-15 transposed
Csa04g02442 Csa-Chr4:24543065 Csa07g00733 Csa-Chr7:5204455 2.13E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g608 . . . . . Bpe12g00295 . . Cmo19g00604 Cmo11g01385 . . . . . Cpe04g00297 Cpe15g00474 . . . . . . . Cla02g00626 Cam02g0659 Cec02g0663 Cco02g0686 Clacu02g0667 . Cre02g0980 . . Cone3ag0993 Cone10ag1014 Lsi03g00523 Csa07g00733 . Cme01g00075 . . . . . . . . . . . Cma11g01729 Cma19g00586 Car11g01111 . . . . . . . . . . . . . . . . . . . Chy01g00081 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008674 0 3 0 0 1 0 2 0 1 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 4 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00733 Csa_Chr07 FPKM 12.048388 13.740319 16.457598 18.392452 15.27089 14.560799 17.368975 14.333782 13.797781 14.954046