Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00734 ATGGATCCAAGTTCTACCGATTCCCCAATATCATCTACTGTTAATTCCTCGGAAACTAAACCACCAGAAGTACACCCTCAGGCTCCTGTTACCACTGGAACGAATAATGTAGCCCGTGATGCACCATCTAAGTTATCTCCTAGTGGCATAACTTCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAGCGACTGAAAATGCTGGGAAGTCAGCTTTTGCACGTTTCACTAGTGGCTTGGGTTTGAACTTATCTCCAAAATCTCCTGCACCCAGTGATTCCCCAGATGGAAATTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGCCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATAAAGTTCTTTGAAACACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCTGAGAGGCTATATGATGCTTCACTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGATCACAACTGTCCCCCAGTTCAACTCATAATATCATTTTGCCAAAGTGCCTATTCGTGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCCGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTTTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGATATTACCTAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGGTGCGTGCTTAGAGGGTTTCGTCTTCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCCGACCATAATGGTGTTCTGTTCTCCACTAAAGTGCATCCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTCGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCATGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTGTACACAAACGATCTTGATGGGTTCGATAAGAGGAAACTACCTTCCCCTGGGTTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACATGGACAACACTACCAAAAAGTCGGATGAAAGCTCAGGCTCCAAGCCTCCTACAGCTGATGGGAGTGAAGTTTCTGAAAACCAAAACAGAAAATCAGGAACTAATGATAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAGGAAGGAGGCAACTTCAGGTTCAGGGGTTGAAGGATCAGCTGTCAATCCGACGACTAAATCTCAAACGAGTATGACTTCATCAGACAATGTTGCGAGTTTATCTCATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTACTGCCAGCGAACGAAAAGGCGATGGAGGTGGAAGATCTGACTCTCTCCCAGAAGTTCCAAATTCAGAAAGTGAATTCAAGGCAATGGCTGCCGATGCTTCTGTTTTCACATTTGGCGACGATGAAGACTACGAGAGTGAGTAA 1839 43.39 MDPSSTDSPISSTVNSSETKPPEVHPQAPVTTGTNNVARDAPSKLSPSGITSWAKNLKISQPQSASQDGATENAGKSAFARFTSGLGLNLSPKSPAPSDSPDGNSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKVHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSKPPTADGSEVSENQNRKSGTNDKDDVFSDSESEGGSSKSRKEATSGSGVEGSAVNPTTKSQTSMTSSDNVASLSHATKQVSLGDGGAKQTATASERKGDGGGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESE* 613
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 5208981 5215476 - CsaV3_7G008330.1 Csa07g00734 536297
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00734 612 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 346 454 IPR035892 -
Csa07g00734 612 MobiDBLite consensus disorder prediction 1 74 - -
Csa07g00734 612 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 14 612 - -
Csa07g00734 612 CDD PTP_PTEN 154 319 IPR045101 GO:0016791
Csa07g00734 612 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311|GO:0016791
Csa07g00734 612 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311|GO:0016791
Csa07g00734 612 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Csa07g00734 612 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 14 612 - -
Csa07g00734 612 MobiDBLite consensus disorder prediction 490 512 - -
Csa07g00734 612 MobiDBLite consensus disorder prediction 456 489 - -
Csa07g00734 612 MobiDBLite consensus disorder prediction 1 73 - -
Csa07g00734 612 MobiDBLite consensus disorder prediction 86 114 - -
Csa07g00734 612 MobiDBLite consensus disorder prediction 513 562 - -
Csa07g00734 612 SMART PTEN_C2_2 328 456 IPR014020 -
Csa07g00734 612 MobiDBLite consensus disorder prediction 454 612 - -
Csa07g00734 612 Gene3D - 328 458 - -
Csa07g00734 612 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Csa07g00734 612 MobiDBLite consensus disorder prediction 87 114 - -
Csa07g00734 612 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Csa07g00734 612 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 325 IPR029021 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00734 Csa-Chr7:5208981 Csa04g02634 Csa-Chr4:25716565 7.44E-08 dispersed
Csa03g03804 Csa-Chr3:33600225 Csa07g00734 Csa-Chr7:5208981 9.64E-46 transposed
Csa06g02964 Csa-Chr6:25642802 Csa07g00734 Csa-Chr7:5208981 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00734 K01110 - csv:101222304 1216.45