Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00735 ATGGCGATTTCGCCCATTTTCTTCGCTTTTCTTGCCCTTTTCTTCTGTCTTTCCCCTTTTTCATCCGCTTCCCATTCATCCACCTTCTCCATCATCGATGAAAACGCTAAACACCACTTGGGTATTCCTGAGATTCCCCATTCTGATGCCCATCAACGCCCCGACGAGGAAGTTGCCGCTTTGTACGAGTCCTGGTTGGTCCATCATGGGAAAGCCTACAATGCTATTGGTGAGAAGGAGAGACGGTTTGAGATTTTTAAGGATAATCTCAGGTTTATTGATGAACATAACCGGGAATCGCGGACGTATAAAGTTGGATTAACCCGTTTTGCCGATCTTACCAATGAGGAATATCGGGCAAGGTTTTTGGGTGGCCGATTCTCCCGGAAGCCTAGGTTATCTGCCGCCAAGAGTGGTAGGTATGCGGCGGCGCTCGGTGATGATCTTCCGGATGATGTCGATTGGAGAAAAAAGGGCGCTGTTGCTACTGTTAAAGATCAAGGACAGTGTGGGAGCTGTTGGGCTTTCTCATCAGTTGCTGCGGTGGAAGGAATAAACCAAATTGTCACTGGCGAATTGATCCCTCTGTCAGAGCAGGAACTTGTTGATTGTGACAAATCATTTAACATGGGTTGCAATGGTGGTCTTATGGACTATGCTTTCCAGTTCATCATTGGCAATGGTGGAATTGACACCGAGGAAGATTACCCTTACAAGGGACGTGATGCCGCTTGCGATCCCAATCGGAAAAATGCCAAGGTTGTAACCATAGATGGATATGAAGATGTTCCTGAGAATGATGAGAGCTCCTTGAAAAAGGCGGTGGCAAATCAACCCGTTAGTGTTGCAATTGAAGCTGGTGGCAGAGCCTTCCAACTTTACCAATCGGGTGTCTTCACTGGCCGTTGTGGAACCGATCTAGATCATGGTGTTGTTGCTGTTGGATATGGAACCGATAACGGTACAGATTATTGGATTGTGAGGAATTCATGGGGTAAAGACTGGGGAGAGAGTGGTTATATCAGGTTGGAGAGAAATGTGGCCAACATTACCACAGGCAAGTGTGGTATTGCAGTACAGCCTTCATACCCCACCAAATCCGGAGCAAACCCTCCAAAACCTTCTGCTTCTCCCCCATCTCCTGTCAAGCCTCCAACTGAATGCGACGAATACTTCTCGTGCGAAGAAGGAAGTACCTGCTGCTGCATCTATCAGTTTGGAAGCACCTGCTTTGCTTGGGGATGCTGCCCCCTCGAGTCCGCAACCTGCTGTGATGACCATTACAGTTGCTGCCCACATGAATATCCCGTCTGTGACCTTGAGGCAGGAACTTGCCGAGTGAGCAAAGACAGCTCGATGGGCGTCAATCTGCTGAAGCGCCTTCCTGCAATACAGACAAAGAAGGTTCAAAAGCTTGGGAAGTTGTTCGTTGGTGCTTGA 1440 48.33 MAISPIFFAFLALFFCLSPFSSASHSSTFSIIDENAKHHLGIPEIPHSDAHQRPDEEVAALYESWLVHHGKAYNAIGEKERRFEIFKDNLRFIDEHNRESRTYKVGLTRFADLTNEEYRARFLGGRFSRKPRLSAAKSGRYAAALGDDLPDDVDWRKKGAVATVKDQGQCGSCWAFSSVAAVEGINQIVTGELIPLSEQELVDCDKSFNMGCNGGLMDYAFQFIIGNGGIDTEEDYPYKGRDAACDPNRKNAKVVTIDGYEDVPENDESSLKKAVANQPVSVAIEAGGRAFQLYQSGVFTGRCGTDLDHGVVAVGYGTDNGTDYWIVRNSWGKDWGESGYIRLERNVANITTGKCGIAVQPSYPTKSGANPPKPSASPPSPVKPPTECDEYFSCEEGSTCCCIYQFGSTCFAWGCCPLESATCCDDHYSCCPHEYPVCDLEAGTCRVSKDSSMGVNLLKRLPAIQTKKVQKLGKLFVGA* 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5217495 5220714 - CsaV3_7G008340.1 Csa07g00735 536298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00735 479 Pfam Granulin 399 445 IPR000118 -
Csa07g00735 479 PANTHER CYSTEINE PROTEASE 43 394 - -
Csa07g00735 479 MobiDBLite consensus disorder prediction 365 385 - -
Csa07g00735 479 CDD Peptidase_C1A 150 364 IPR039417 -
Csa07g00735 479 SMART GRAN_2 388 445 IPR000118 -
Csa07g00735 479 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 307 317 IPR025660 -
Csa07g00735 479 Gene3D Granulin 385 448 IPR037277 -
Csa07g00735 479 SMART Inhibitor_I29_2 62 118 IPR013201 -
Csa07g00735 479 Pfam Papain family cysteine protease 149 364 IPR000668 GO:0006508|GO:0008234
Csa07g00735 479 Gene3D Cysteine proteinases 44 367 - -
Csa07g00735 479 MobiDBLite consensus disorder prediction 367 385 - -
Csa07g00735 479 PRINTS Papain cysteine protease (C1) family signature 167 182 IPR000668 GO:0006508|GO:0008234
Csa07g00735 479 PRINTS Papain cysteine protease (C1) family signature 309 319 IPR000668 GO:0006508|GO:0008234
Csa07g00735 479 PRINTS Papain cysteine protease (C1) family signature 324 330 IPR000668 GO:0006508|GO:0008234
Csa07g00735 479 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 167 178 IPR000169 -
Csa07g00735 479 Pfam Cathepsin propeptide inhibitor domain (I29) 62 118 IPR013201 -
Csa07g00735 479 SUPERFAMILY Cysteine proteinases 54 365 IPR038765 -
Csa07g00735 479 SMART pept_c1 149 365 IPR000668 GO:0006508|GO:0008234
Csa07g00735 479 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Csa07g00735 479 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 43 394 - -
Csa07g00735 479 SUPERFAMILY Granulin repeat 385 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00735 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101222543 953.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02095 Csa-Chr2:19052524 Csa07g00735 Csa-Chr7:5217495 1.58E-138 dispersed
Csa04g02733 Csa-Chr4:26284886 Csa07g00735 Csa-Chr7:5217495 6.34E-125 dispersed
Csa07g00207 Csa-Chr7:1660381 Csa07g00735 Csa-Chr7:5217495 9.25E-132 dispersed
Csa07g00735 Csa-Chr7:5217495 Csa06g02918 Csa-Chr6:25308049 4.07E-90 dispersed
Csa02g00352 Csa-Chr2:2433215 Csa07g00735 Csa-Chr7:5217495 6.37E-12 transposed
Csa02g01785 Csa-Chr2:17282162 Csa07g00735 Csa-Chr7:5217495 5.77E-109 transposed
Csa04g02439 Csa-Chr4:24530485 Csa07g00735 Csa-Chr7:5217495 0 wgd
Csa06g02962 Csa-Chr6:25633938 Csa07g00735 Csa-Chr7:5217495 3.19E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00735 Csa_Chr07 FPKM 12.199384 13.860908 4.290815 5.215286 12.287718 11.283213 11.972166 4.132582 3.578787 3.267013