Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00736 ATGAAAATGGCCACAACCTCTGCTTTTGCATTTTTATCCATCTTTAATCTCCTCCTCTTCTCCACATTTTCTGCTCTCGCCCTCGATATCGGTATCGGCATCGGCATTGGCAGCAATGGAAAGACCCCTCCTCCCTCGGAATCCCCTGATTGCAACACTCCTCCTCCACCACCACCACCACCACTTCCTCCTCCTCCTCCTCCTCCTACACTACCGCCGCCACCACCGATGCCAAAGCCGCCAAGAAAGCAACCACCATCGACCTCCCCAACAAAACCGCCGGCGCTGCGATTTGAGAGCGAGAGAATTAGAATTGCGTATTTTGTGATAAAGGACTACAAAAGTAGAATCGAGAATGACCCATTGCAGGTTAAGAAAACATGGGTTGGGACAGACGTTTGTCATTACACTGGATTCAGTTGCGACGTAGTTCCCAATTACGGAAAGCAGAGAGGGGTTTCGGGCCTTAGCTTCAACAATTTCAATTTCAGTGGCCGAAGATTGAGCCTCGATGGGCTAGTGGAAAAGCTGCCGGATCTCACATTCTTCCATGCTAATTCAAACTTCTTCTTCTCCACCATCCCCAAACTCATCTCCACCGTCAATTTCTTTTACGAGCTCGATCTTAGCAATAACAAATTTACAGGGCCGTTCCCCAGTGAAGTCCTGGGCGCTGTTAATCTGACATTCTTGGACATCCGATTCAATAACTATTACGGTCCGATTCGGTCTGAGTTGTTTGATATGGACATTATCACCGCCATCTTCCTCAACAACAATAAGTTTAATCAGGACATTCCGGCCAACCTCGGCAACACCCCTGCTCGGTACCTAACATTCACGAGCAACGAGCTCACCGGCCCAATCCCAAAAAGCATCGGAATCGGAAAAACAAAGAAGAACCTAATCGAAGTTCTCTTCTCCGACAACAAGCTTTCTGGCTGCTTACCAATGGAAATCGGTCTCTTAGAGAACACCGTTCTCTTCAATGCAAGCAAAAACTGCCTCACCGGCCCAATCCCATACTCCTTTTGCTGCTTAACCAAAATGGAGATTCTCAATTTCTTCGGCAACAACTTATACGGTGCCATTCCGGAGGACGTCTGTAAATTACCCAACCTCCAAAAATTCAACCTTAGCAACAACTTCATCACCCAAGTCGGCCCCGTCTGCCGGAGCTTGATCTGGAAGAATATTCTTGACGTTTCTGGAAACTGCATTTTGGGTCTGCCAAAACAGAGGCCGGAGAAGGAATGTACGAACTTCTTTAGCAAAGCTCATTCTTGTCCTGATGAAAAGTCTATGAAGATTATTCCTTGTAAGGCTACGGATTATTACCAGTCCCATCCACCGCCACCGAGGAAGCTGACGGAGATGAGAACTACTGCTGCTCTTATTCCTAATTGA 1407 47.33 MKMATTSAFAFLSIFNLLLFSTFSALALDIGIGIGIGSNGKTPPPSESPDCNTPPPPPPPPLPPPPPPPTLPPPPPMPKPPRKQPPSTSPTKPPALRFESERIRIAYFVIKDYKSRIENDPLQVKKTWVGTDVCHYTGFSCDVVPNYGKQRGVSGLSFNNFNFSGRRLSLDGLVEKLPDLTFFHANSNFFFSTIPKLISTVNFFYELDLSNNKFTGPFPSEVLGAVNLTFLDIRFNNYYGPIRSELFDMDIITAIFLNNNKFNQDIPANLGNTPARYLTFTSNELTGPIPKSIGIGKTKKNLIEVLFSDNKLSGCLPMEIGLLENTVLFNASKNCLTGPIPYSFCCLTKMEILNFFGNNLYGAIPEDVCKLPNLQKFNLSNNFITQVGPVCRSLIWKNILDVSGNCILGLPKQRPEKECTNFFSKAHSCPDEKSMKIIPCKATDYYQSHPPPPRKLTEMRTTAALIPN* 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5224312 5226559 + CsaV3_7G008350.1 Csa07g00736 536299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00736 468 MobiDBLite consensus disorder prediction 47 92 - -
Csa07g00736 468 MobiDBLite consensus disorder prediction 39 95 - -
Csa07g00736 468 Gene3D Ribonuclease Inhibitor 275 429 IPR032675 -
Csa07g00736 468 SUPERFAMILY Formin homology 2 domain (FH2 domain) 56 207 - -
Csa07g00736 468 Gene3D Ribonuclease Inhibitor 109 273 IPR032675 -
Csa07g00736 468 SUPERFAMILY L domain-like 128 409 - -
Csa07g00736 468 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 61 453 - -
Csa07g00736 468 PANTHER BNAC05G26270D PROTEIN 61 453 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00736 - - - csv:101217723 794.653
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00736 Csa-Chr7:5224312 Csa02g00136 Csa-Chr2:948141 6.84E-77 dispersed
Csa07g00736 Csa-Chr7:5224312 Csa07g00737 Csa-Chr7:5228844 3.16E-168 tandem
Csa02g01928 Csa-Chr2:18112045 Csa07g00736 Csa-Chr7:5224312 2.65E-99 wgd
Csa03g01831 Csa-Chr3:14036627 Csa07g00736 Csa-Chr7:5224312 7.80E-137 wgd
Csa04g02432 Csa-Chr4:24482429 Csa07g00736 Csa-Chr7:5224312 1.18E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g378 Blo02g00837 . . . . Bpe12g00047 . . Cmo19g00607 Cmo11g01379 . . . . . Cpe04g00293 Cpe15g00477 Bhi05g01086 . . . . . . Cla02g00623 Cam02g0657 Cec02g0660 Cco02g0683 Clacu02g0665 Cmu02g0660 Cre02g0978 . Cone8ag1115 Cone3ag0990 Cone10ag1008 . Csa07g00736 . Cme01g00072 . . . . . . . Bma08g00812 . . . . Cma19g00588 . Car19g00446 . . . . . . . . . . . . . . . . . . Chy01g00078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00736 Csa_Chr07 FPKM 1.197802 1.348714 12.57021 13.261795 0.0 1.204605 1.375133 4.182055 4.090623 5.241281