Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00737 ATGGCCATACCCTCTCCTTTTGCCTTACTATTATTTCTCTCTTACCTCTTTCTCTTCACTTTCTTCTCCACCGCCACCCCCTTCCTACACCCATCATCCTCTCCGCCTCATATTGATAGTCCTGAAGTTAAACATACCGACACTTTCTTTTTCTACTTTTGGCATTCTCCTCCACCTCCCCAATCTTCACCTCCACCTCCACTTCCTCCTCCCCCTCCACCTCCACTCCCTCCTTCCCCTCCACCTCCAATTCCTCCTCCTCCTCCGCCTCCACATCCTCCTCCTCCTCCACCTTTCTGTGCCACACCATCACCACCACCACCACGTCCGCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCATCCTCCTCCACCACCTCCCCCCCGGCGGTCTCGTCCGCCTCCCCCGCCGCCCCCATCGCGACTTAAAATTGCATTTAATACAATACAAAAATTCCTACCAAGAGTGGAGCTTGACCCGCAAAATAAATTAAAGACGTGGAAAGGGCCAGATGTTTGCAAATACGAAGGGATTGGCTGTGATAAAGTTCCGGATTACAAAACCATAGCAGCGTCGGGAGTAAGCATCAACGGCTACGGATGGAGTGGTTCTAAGCTGACTCTAAATGGGTTCATCGACCAGTTGCCGGATATCGCTTACTTCCATGCAAACTCCAACAACTTCTCCGGCACCATCCCTGAACTCATCTCTGATCTCAGATTCTTCTACGAGCTTGACCTTAGCAACAACAAATTCTCCGGCGACTTTCCAAAGCAAGTTCTAGGCGCTACAAAACTCACGTTCTTGGATATAAGGTTCAACACTTTCAGCGGTCCAGTGCCGGGGAAACTGTTTGATATGGACATTATCACGGCTATCTTCCTCAATGACAATAAGTTTAATAACTGCATTCCGGCTAACCTCGGCAACACCCCTGCTAGGTACCTAACGTTCACAAGCAACGAGTTCACCGGCCCCATCCCAAAAAGCATAGGAATCGGAAAAACAAAGACGAACCTAATCGAAGTCCTGTTCTCCGACAACAAGCTCTCCGGCTGCTTACCGATGGAGATCGGTCTCTTAGAGAACACCATTCTCTTCGACGCAAGTAAAAACTCTCTCACCGGCCCAATCCCATTTTCCTTTTCTTGCTTAGCCAAAATGCAGGTTCTCAATTTCGCGAACAACACCTTATACGGCGCCGTGCCGGAAGGTGTGTGCAAGTTACCAGACATCCAACAATTGACCCTCCGCAACAACTTCATCACCCAAGTCGGCCCCATCTGCCGGAGCTTGATCTCGAAGAAAGTTCTAGACGTTTCGGGAAACTGCATTTTGGGTCTGCCGGAACAGAAATCGGAAGAGGAATGTACTCATTTCTTCACTCATGTTGAGCTGTGTCCTGATGAGAAGTCAATGAAGTACATTCCTTGTAAAGAGAATTGGTATTTGAATGAAGATCCCGCCGCCGTACTCCGTCGGCCGGCCAGAAAAGTGACGGAGTTGAGAACATACGCAGCTCTTTCTCCAGTACATTAA 1551 49.71 MAIPSPFALLLFLSYLFLFTFFSTATPFLHPSSSPPHIDSPEVKHTDTFFFYFWHSPPPPQSSPPPPLPPPPPPPLPPSPPPPIPPPPPPPHPPPPPPFCATPSPPPPRPPPPPPPPPPPPPPPHPPPPPPPRRSRPPPPPPPSRLKIAFNTIQKFLPRVELDPQNKLKTWKGPDVCKYEGIGCDKVPDYKTIAASGVSINGYGWSGSKLTLNGFIDQLPDIAYFHANSNNFSGTIPELISDLRFFYELDLSNNKFSGDFPKQVLGATKLTFLDIRFNTFSGPVPGKLFDMDIITAIFLNDNKFNNCIPANLGNTPARYLTFTSNEFTGPIPKSIGIGKTKTNLIEVLFSDNKLSGCLPMEIGLLENTILFDASKNSLTGPIPFSFSCLAKMQVLNFANNTLYGAVPEGVCKLPDIQQLTLRNNFITQVGPICRSLISKKVLDVSGNCILGLPEQKSEEECTHFFTHVELCPDEKSMKYIPCKENWYLNEDPAAVLRRPARKVTELRTYAALSPVH* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5228844 5231105 + CsaV3_7G008360.1 Csa07g00737 536300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00737 516 PRINTS Proline rich extensin signature 24 36 - -
Csa07g00737 516 PRINTS Proline rich extensin signature 62 83 - -
Csa07g00737 516 PRINTS Proline rich extensin signature 83 99 - -
Csa07g00737 516 PRINTS Proline rich extensin signature 100 117 - -
Csa07g00737 516 Gene3D Ribonuclease Inhibitor 317 469 IPR032675 -
Csa07g00737 516 Gene3D Ribonuclease Inhibitor 151 316 IPR032675 -
Csa07g00737 516 SUPERFAMILY L domain-like 194 451 - -
Csa07g00737 516 MobiDBLite consensus disorder prediction 122 145 - -
Csa07g00737 516 MobiDBLite consensus disorder prediction 58 94 - -
Csa07g00737 516 PANTHER BNAC05G26270D PROTEIN 107 514 - -
Csa07g00737 516 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 107 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00737 - - - csv:101217962 780.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01831 Csa-Chr3:14036627 Csa07g00737 Csa-Chr7:5228844 2.17E-133 dispersed
Csa04g02432 Csa-Chr4:24482429 Csa07g00737 Csa-Chr7:5228844 5.52E-101 dispersed
Csa07g00737 Csa-Chr7:5228844 Csa02g00136 Csa-Chr2:948141 1.90E-69 dispersed
Csa07g00736 Csa-Chr7:5224312 Csa07g00737 Csa-Chr7:5228844 3.16E-168 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00737 Csa_Chr07 FPKM 1.57111 2.151951 2.164823 2.188558 5.873026 4.846521 5.512434 1.539791 1.394034 1.579672