Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00747 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCTAACTCCGGCGCCGATCCGGCTGCCAATGGAGGGGCAAATCAGCATGTCACCACCTCCCTCTATGTTGGAGATCTTGACGTTAACGTCACCGATTCCCAGCTTTATGATCTTTTCAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTAACCAGTCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTAGATGTGCTAAACTTCACCCCTTTGAATGGAAATCCTATTAGAGTCATGTATTCTCATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAACATATTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCGTTGCATGATACTTTCTCTGCATTTGGAAGCATTCTATCATGCAAGGTTGCTACCGATTCATCTGGCCAGTCTAAGGGCTTTGGTTTTGTGCAATTTGACACCGAGGAAGCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTCAATAACGTTTTTGTCAAGAATCTCGCAGAAACTACCTCTGAAGAAGATTTGAAGAATATGTTTGGGGAGTTCGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTAAATTTTGAGAATGCGGATGATGCTGCTAGATCTGTTGAAGCACTTAATGGAAAGAAGGTTGATGGGAAAGAGTGGTACGTTGGGAAAGCCCAGAAGAAATCTGAAAGAGAAGTTGAACTGAAAAGTCGATTTGAACAGAGTGTAAAAGAAGCCGCTGACAAGTATCAAGGAGCAAACTTATATGTTAAGAATTTAGATGATAGCATCGATGATGACAAACTGAAGGAGTTATTCACTGGTTTTGGAACCATTACCTCATGCAAGGTTATGCGTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTCTCTTCTCCTGAAGAGGCTGCAAGAGCTCTTGCTGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAAGCACAGTTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCTATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTCTATGGACAAGCTCCACCGACTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGTCAGCAAGGGCAAAGATCGGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCTGTACCTTTGATGCAGCAGCAGATGCTACCTAGAGGACGCGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGAATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCACGTGATGCTGTTCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCTACTCCAGACCAGCAGAGAACGATGCTGGGGGAGAACCTTTATCCACTTGTTGAACAGCTAGAGCCTGATAATGCCGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTACATTTGCTTGAGTCGCCCGAAGCTCTGAAAGCTAAGGTGGCGGAAGCAATGGAGGTTTTAAGAAGTGTCGCTCAGCAGTCTGGCAATGCAGCTGATCAATTGGCTTCACTATCCTTGACTGACAATCTTGATTCCTAA 1950 46.31 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQSGNAADQLASLSLTDNLDS* 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5262014 5266176 + CsaV3_7G008460.1 Csa07g00747 536310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00747 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Csa07g00747 649 CDD RRM1_I_PABPs 30 109 - -
Csa07g00747 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Csa07g00747 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Csa07g00747 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Csa07g00747 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Csa07g00747 649 Gene3D - 111 197 IPR012677 -
Csa07g00747 649 Gene3D - 4 110 IPR012677 -
Csa07g00747 649 SUPERFAMILY PABC (PABP) domain 493 639 IPR036053 GO:0003723
Csa07g00747 649 SMART rrm1_1 118 190 IPR000504 GO:0003723
Csa07g00747 649 SMART rrm1_1 312 384 IPR000504 GO:0003723
Csa07g00747 649 SMART rrm1_1 209 281 IPR000504 GO:0003723
Csa07g00747 649 SMART rrm1_1 30 103 IPR000504 GO:0003723
Csa07g00747 649 MobiDBLite consensus disorder prediction 1 23 - -
Csa07g00747 649 CDD RRM3_I_PABPs 207 286 - -
Csa07g00747 649 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Csa07g00747 649 SMART rrm2_1 118 190 IPR003954 GO:0003676
Csa07g00747 649 SMART rrm2_1 312 384 IPR003954 GO:0003676
Csa07g00747 649 SMART rrm2_1 209 281 IPR003954 GO:0003676
Csa07g00747 649 SMART rrm2_1 30 103 IPR003954 GO:0003676
Csa07g00747 649 Gene3D - 547 631 - -
Csa07g00747 649 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Csa07g00747 649 CDD RRM4_I_PABPs 310 388 - -
Csa07g00747 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Csa07g00747 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Csa07g00747 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Csa07g00747 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Csa07g00747 649 CDD RRM2_I_PABPs 115 191 IPR045305 -
Csa07g00747 649 Gene3D - 296 400 IPR012677 -
Csa07g00747 649 Gene3D - 198 295 IPR012677 -
Csa07g00747 649 PANTHER RNA BINDING PROTEIN 18 634 - -
Csa07g00747 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Csa07g00747 649 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Csa07g00747 649 PANTHER POLYADENYLATE-BINDING PROTEIN 18 634 - -
Csa07g00747 649 SMART poly_2 564 627 IPR002004 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00852 Csa-Chr4:6030697 Csa07g00747 Csa-Chr7:5262014 2.67E-08 dispersed
Csa07g00456 Csa-Chr7:3289338 Csa07g00747 Csa-Chr7:5262014 4.94E-11 dispersed
Csa07g00747 Csa-Chr7:5262014 Csa04g02386 Csa-Chr4:24187265 8.36E-15 dispersed
Csa03g00765 Csa-Chr3:6731088 Csa07g00747 Csa-Chr7:5262014 1.97E-12 transposed
Csa03g01067 Csa-Chr3:8495099 Csa07g00747 Csa-Chr7:5262014 4.29E-09 transposed
Csa03g01588 Csa-Chr3:11779608 Csa07g00747 Csa-Chr7:5262014 3.08E-24 transposed
Csa06g00488 Csa-Chr6:4128153 Csa07g00747 Csa-Chr7:5262014 0 transposed
Csa06g02452 Csa-Chr6:21862364 Csa07g00747 Csa-Chr7:5262014 8.93E-15 transposed
Csa02g01195 Csa-Chr2:11747886 Csa07g00747 Csa-Chr7:5262014 4.83E-14 wgd
Csa03g01837 Csa-Chr3:14099253 Csa07g00747 Csa-Chr7:5262014 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00747 K13126 - csv:101223017 1209.9