Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00764 ATGCTCATGGCCTCCGACCACCCCCCCTTCTCCCCCGCCTTCCGCCGCATCACCGAAGAACAAGAACTCTCTGTCATCGTCGACGCTCTCACCCAAGTCGTATCCGGCGCCCCCTCCTCCGCCCTCTCTTTCCACCACGACCATTTCCTCCGCGTCCTCTTCCCTCCTATTAACCCCACTCCTCCCTTCTCCTCCTCTTCAGAGTTCGACACATGTCCTCTCTGTAAAATCAACGGTTGCCTAGGCTGCCACTTCTTCTCCGCCCCCGCCTCTACCACTACTACAACCGCCAACGCCGCCAACAAAAACAACAATTCCGGGCGCCGAGTGAAGCGTCTGAAGAAGAATTATAGAGGCGTCCGACAACGCCCTTGGGGGAAATGGGCGGCTGAAATCCGTGACCCGATACGTGCGGCACGTGTCTGGCTTGGTACATTCAATACCGCTGAAGATGCCGCACGTGCTTACGATGAAGCTGCTATTAAATTCCGTGGCCCACGTGCCAAACTTAATTTCCCCTTCCCTGATTATTCCTTATCCTCCACATTCCATTCTTCTCCCCCTCCGGCTTCTACCACCACCTCCGCCTCCGCCTCCTTCTCCCCTGCCGCACCACCACCACCACCGCTCCTCCCAACCAGTACTACTACCTCCTCATCTATGAAAATCGAGATCACCCAAAACAACATCCCATTTCCAGAATTTTTCATCAACGACGAAGATGGCGACGTTCAAAGATATCTCTTCGATTATGATAATCAATCAAGAAGCTTGTAA 777 53.93 MLMASDHPPFSPAFRRITEEQELSVIVDALTQVVSGAPSSALSFHHDHFLRVLFPPINPTPPFSSSSEFDTCPLCKINGCLGCHFFSAPASTTTTTANAANKNNNSGRRVKRLKKNYRGVRQRPWGKWAAEIRDPIRAARVWLGTFNTAEDAARAYDEAAIKFRGPRAKLNFPFPDYSLSSTFHSSPPPASTTTSASASFSPAAPPPPPLLPTSTTTSSSMKIEITQNNIPFPEFFINDEDGDVQRYLFDYDNQSRSL* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5367835 5369430 + CsaV3_7G008630.1 Csa07g00764 536327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00764 258 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Csa07g00764 258 MobiDBLite consensus disorder prediction 183 220 - -
Csa07g00764 258 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Csa07g00764 258 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Csa07g00764 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 15 215 - -
Csa07g00764 258 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 215 - -
Csa07g00764 258 MobiDBLite consensus disorder prediction 183 200 - -
Csa07g00764 258 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Csa07g00764 258 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Csa07g00764 258 CDD AP2 115 173 IPR001471 GO:0003700|GO:0006355
Csa07g00764 258 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Csa07g00764 258 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00764 - - - csv:101219627 432.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01565 Csa-Chr2:14812830 Csa07g00764 Csa-Chr7:5367835 1.02E-29 dispersed
Csa06g00279 Csa-Chr6:2006044 Csa07g00764 Csa-Chr7:5367835 4.97E-31 dispersed
Csa06g00510 Csa-Chr6:4315875 Csa07g00764 Csa-Chr7:5367835 5.49E-29 dispersed
Csa06g02825 Csa-Chr6:24644291 Csa07g00764 Csa-Chr7:5367835 3.00E-30 dispersed
Csa07g00482 Csa-Chr7:3489549 Csa07g00764 Csa-Chr7:5367835 4.42E-26 dispersed
Csa07g00764 Csa-Chr7:5367835 Csa07g02316 Csa-Chr7:21492209 2.58E-27 dispersed
Csa03g01860 Csa-Chr3:14322827 Csa07g00764 Csa-Chr7:5367835 1.40E-50 wgd
Csa06g02937 Csa-Chr6:25441594 Csa07g00764 Csa-Chr7:5367835 1.60E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g418 . . . . . Bpe12g00058 . . Cmo19g00624 Cmo11g01359 . . . . Sed04g1638 . . Bhi05g01124 Tan02g0906 Cmetu06g0968 . Hepe02g0583 . . Cla02g00597 Cam02g0626 Cec02g0626 Cco02g0641 Clacu02g0630 Cmu02g0626 Cre02g0950 Cone6ag1392 . . . . Csa07g00764 . . Blo04g00488 Blo13g00573 . Bda14g00518 Bpe15g00897 . Bma03g00518 Bma08g00799 . . . Cma11g01754 Cma19g00606 . Car19g00460 . . . . . . . . . . . . . . . . . . Chy01g00050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000711 2 2 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 7 2 3 3 5 3 3 2 3 3 4 3 2 97
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32292 PF00847 AP2 3.30E-15 CL0081 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00764 Csa_Chr07 FPKM 12.127142 12.523534 11.544876 10.71835 16.415529 16.489511 17.630608 27.741493 25.918667 28.129221