Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00768 ATGGTGGAATCGAACCTGACTTATGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAGCTTGCTGATGCTTTCAAATCTTCCAGTCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGTCAAACACTCGATGCCTCGTCCTTCTCTGTGAGAAGGTCTAGCCGTTTTTCCGACAAGCCCCCTATGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATTAGAAGAAGTTATCAAAGGAGAGATTTGTTGAATCGGATTTATGCTTCAGATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACCTTCAATCAAGCCTGGAATCTGAGTACCCCAGTTTTGTGAAGCCAATGCTTCAATCACATGTTTCAGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGACACATCTTCCCCGTGAGGATGAAATTCTAACTTTGGTGGACGAGGATGAAAATGAGTTCCAAACGAAATACCTTGCCGACAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAATCCAACTGAATTCAAGGTATATATCATCAGGACATATAATTCCGCAGACAAAGAAGATACCAAAGAGGGTTCTGACGCCACCCAATTGGAAAGCAGTGGCAAAAAGAACAGCAAATCATCAGGGCACAAATCCAGGGCAAATAATTCCGAGGATAAAGGAGATAACGATGAGAATTCAGATGTCTTTCAGTTGGGAAAAGGTGGTAAAAGAAGTACTAGATCATCAAGGGGTAAAAGCAGGGCAAATAAATCTGAAGATAAATCAGATACCGGCACGGATTCCAACGTCCCCCAGTTGGGAAATAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGGAAAAAGTAA 969 43.14 MVESNLTYEECRRQRLEENKKRMEELNLNKLADAFKSSSPKSSPTKQLKRPRQTLDASSFSVRRSSRFSDKPPMNYKEVPIEPLPGIRRSYQRRDLLNRIYASDEERQYAIDRARDLQSSLESEYPSFVKPMLQSHVSGGFWLGLPVQFCKTHLPREDEILTLVDEDENEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTNPTEFKVYIIRTYNSADKEDTKEGSDATQLESSGKKNSKSSGHKSRANNSEDKGDNDENSDVFQLGKGGKRSTRSSRGKSRANKSEDKSDTGTDSNVPQLGNSGKRITRSSSKGKK* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5384625 5387622 - CsaV3_7G008670.1 Csa07g00768 536331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00768 322 SMART B3_2 128 219 IPR003340 GO:0003677
Csa07g00768 322 MobiDBLite consensus disorder prediction 251 266 - -
Csa07g00768 322 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 2 226 - -
Csa07g00768 322 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Csa07g00768 322 MobiDBLite consensus disorder prediction 298 314 - -
Csa07g00768 322 MobiDBLite consensus disorder prediction 32 68 - -
Csa07g00768 322 MobiDBLite consensus disorder prediction 224 322 - -
Csa07g00768 322 Coils Coil 6 33 - -
Csa07g00768 322 MobiDBLite consensus disorder prediction 32 81 - -
Csa07g00768 322 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Csa07g00768 322 Gene3D - 103 220 IPR015300 -
Csa07g00768 322 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 226 IPR044837 -
Csa07g00768 322 CDD B3_DNA 126 217 IPR003340 GO:0003677
Csa07g00768 322 SUPERFAMILY DNA-binding pseudobarrel domain 121 217 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01470 Csa-Chr2:14127394 Csa07g00768 Csa-Chr7:5384625 6.96E-37 dispersed
Csa02g01982 Csa-Chr2:18510551 Csa07g00768 Csa-Chr7:5384625 2.51E-51 dispersed
Csa07g00768 Csa-Chr7:5384625 Csa03g04152 Csa-Chr3:36478446 5.10E-08 dispersed
Csa02g01981 Csa-Chr2:18506838 Csa07g00768 Csa-Chr7:5384625 1.26E-77 wgd
Csa03g01866 Csa-Chr3:14378104 Csa07g00768 Csa-Chr7:5384625 3.87E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32293 PF02362 B3 2.60E-15 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00768 - - csv:101206354 616.69