Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g00768 | ATGGTGGAATCGAACCTGACTTATGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAGCTTGCTGATGCTTTCAAATCTTCCAGTCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGTCAAACACTCGATGCCTCGTCCTTCTCTGTGAGAAGGTCTAGCCGTTTTTCCGACAAGCCCCCTATGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATTAGAAGAAGTTATCAAAGGAGAGATTTGTTGAATCGGATTTATGCTTCAGATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACCTTCAATCAAGCCTGGAATCTGAGTACCCCAGTTTTGTGAAGCCAATGCTTCAATCACATGTTTCAGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGACACATCTTCCCCGTGAGGATGAAATTCTAACTTTGGTGGACGAGGATGAAAATGAGTTCCAAACGAAATACCTTGCCGACAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAATCCAACTGAATTCAAGGTATATATCATCAGGACATATAATTCCGCAGACAAAGAAGATACCAAAGAGGGTTCTGACGCCACCCAATTGGAAAGCAGTGGCAAAAAGAACAGCAAATCATCAGGGCACAAATCCAGGGCAAATAATTCCGAGGATAAAGGAGATAACGATGAGAATTCAGATGTCTTTCAGTTGGGAAAAGGTGGTAAAAGAAGTACTAGATCATCAAGGGGTAAAAGCAGGGCAAATAAATCTGAAGATAAATCAGATACCGGCACGGATTCCAACGTCCCCCAGTTGGGAAATAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGGAAAAAGTAA | 969 | 43.14 | MVESNLTYEECRRQRLEENKKRMEELNLNKLADAFKSSSPKSSPTKQLKRPRQTLDASSFSVRRSSRFSDKPPMNYKEVPIEPLPGIRRSYQRRDLLNRIYASDEERQYAIDRARDLQSSLESEYPSFVKPMLQSHVSGGFWLGLPVQFCKTHLPREDEILTLVDEDENEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTNPTEFKVYIIRTYNSADKEDTKEGSDATQLESSGKKNSKSSGHKSRANNSEDKGDNDENSDVFQLGKGGKRSTRSSRGKSRANKSEDKSDTGTDSNVPQLGNSGKRITRSSSKGKK* | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5384625 | 5387622 | - | CsaV3_7G008670.1 | Csa07g00768 | 536331 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g00768 | 322 | SMART | B3_2 | 128 | 219 | IPR003340 | GO:0003677 | |
Csa07g00768 | 322 | MobiDBLite | consensus disorder prediction | 251 | 266 | - | - | |
Csa07g00768 | 322 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 | 2 | 226 | - | - | |
Csa07g00768 | 322 | Pfam | B3 DNA binding domain | 128 | 217 | IPR003340 | GO:0003677 | |
Csa07g00768 | 322 | MobiDBLite | consensus disorder prediction | 298 | 314 | - | - | |
Csa07g00768 | 322 | MobiDBLite | consensus disorder prediction | 32 | 68 | - | - | |
Csa07g00768 | 322 | MobiDBLite | consensus disorder prediction | 224 | 322 | - | - | |
Csa07g00768 | 322 | Coils | Coil | 6 | 33 | - | - | |
Csa07g00768 | 322 | MobiDBLite | consensus disorder prediction | 32 | 81 | - | - | |
Csa07g00768 | 322 | ProSiteProfiles | B3 DNA-binding domain profile. | 128 | 219 | IPR003340 | GO:0003677 | |
Csa07g00768 | 322 | Gene3D | - | 103 | 220 | IPR015300 | - | |
Csa07g00768 | 322 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 2 | 226 | IPR044837 | - | |
Csa07g00768 | 322 | CDD | B3_DNA | 126 | 217 | IPR003340 | GO:0003677 | |
Csa07g00768 | 322 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 217 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01470 | Csa-Chr2:14127394 | Csa07g00768 | Csa-Chr7:5384625 | 6.96E-37 | dispersed | |
Csa02g01982 | Csa-Chr2:18510551 | Csa07g00768 | Csa-Chr7:5384625 | 2.51E-51 | dispersed | |
Csa07g00768 | Csa-Chr7:5384625 | Csa03g04152 | Csa-Chr3:36478446 | 5.10E-08 | dispersed | |
Csa02g01981 | Csa-Chr2:18506838 | Csa07g00768 | Csa-Chr7:5384625 | 1.26E-77 | wgd | |
Csa03g01866 | Csa-Chr3:14378104 | Csa07g00768 | Csa-Chr7:5384625 | 3.87E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32293 | PF02362 | B3 | 2.60E-15 | CL0405 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g00768 | - | - | csv:101206354 | 616.69 |