Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00778 ATGCCGTCGAAGGGAAAGAAGAACGCAAAGACACTCTCTAGATTGTCTAACTCAAACCACTCTCAATCTCCTGTGTCACGGTTCACAATACCTCCTGTCTCCCAAGTTTCTGAAGATGAGTTTCTTTCCTCCATTGAAGAAGCTTCAAGTAAATATCCTTTTTTGATTGGTAAATCTGCTTTTGTTGGAAGACTTATTAAGGATCCTGTTCAATCTACTGCCTGTAAAGTTTGGCTTTCTGAATCTTCTATGCTTGCTTCTAGCTTCACCCAAGGAGCTATTGTCTCGGTAGCACTTAGTTCGGAGGGAGGTAACTTTCCTCTGTCCTCTTTAGCAGACGAATGCGGTATGCACTTTGGGGTTGATTATGGAAATTCAATAATTCATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCTTCTGGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAAACCTTTCATTTACCTTGGGTTGCCCTACAATTGGCCGTGTTGTGTTTATCTCTCCTTTGAAAACCCATCTTTGCAATGATCCATTGAATGATAATGGAAAATTGAAGAGCACAGAAGTTAACTTTTTGAGAATATACAATTGTAAGGAACTGTTTCTGGATCTAGCGTCTTCAACCAATGTATCAACAAAAGACAACTTATTCCCATCCTCAACTATTTATTCAAGAAAGGTTCATGGTCGTAGTGAAAGTGGTAATTTAACATCCCCAAGCACCATGCGGTCTGCTTCTCCTAAATGTGATGAGGTGGTCTCAAACTTACCAAGTCCATTTGTTCATTCACTTATTGAGTCCTTAGGAGATGATACCGTCAGAAAAACTCTACAGACGATTGCCTCCAATGAGTTGTATAAACGTTGTGTGCTACGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTTCATGTAAGGGGTGCGAAAGGACTGTCAGGATATGATGACTCTTATGATTCTGTGAACAGTGGAAGCGACGATCATTTTCAACATTATTCATCAGATGAATATGCAAATTGTGCTTTCAATATAGACCAGCTGACAAAAGTATTTATAAATGTTCAATCAACCACGGTCTCAGAGACAAATCAAGAAATTTTTCCATCAAATGTGGAACCTCAAAATCTAAATATCAGAGCTAAAGTAAAGCCTAAAGTTCGGAAATTGGGTGGTCTTTCAAAAGAGTATTCAGTTTTGAAGGATATTATAATTTCTTCATCATTAAATAGCACCATGTCAAGCCTTGGTTTTCGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATCTGCTCATGACGCTGGTGTCAACCTGTTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCGCTGCATGATGTTTTTGAGGAGGCAAGCCAAGCTGCACCTGCTGTGGTATTAATTGATGAGTTGGATGCTATTGCACCTGCAAGAAAAGATGGAGGTGAAGAACTGTCTCAAAGAATTGTTGCTACACTGCTTAATCTAATGGATGGGATCAAGCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGACCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCTTCTCCCAACCAACGTTTGGATATTCTACATACAATACTTAGTGAAATGGAGCACTCTCTTTCAGTCGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTCGTGGGTGCTGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCAAAAGTTTAAAGTTTCTTCTGATTATCATAGTTTTGGTAGATCTGTTATAGCAGAGGAACAGCACAAGTTTAATGAGGTGGCTCATAAAGCCAATGACGATCATATGATATCGGAACCTGTTCTCTTACAAGATGAAGGAAGTATATCAGGGGTTTGCCAAAACCTTGTGTCTTCATCAATCTCTGAACATACTTTTACATCTGACCCCCTAACATGTGTGTCCTCGAATGAAGTGGTTGCTGATAGCGAGGATAGTTTTAACTCTTCTGAAATCAAGTGTAAATTGAAGGTTGTTTTTGAAGACTTTGAGATAGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAATGGAGGTTAAGGCTCAATTAATGGAAACAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAACGAATAGGGACTCGACCTCCAGCAGGAGTGTTATTGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGAGCTAATGCCCCATCAATCGTGTTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGCTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGACCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGCTGCTTTATGTTGGGCCCCCAAACGAATCTGAGCGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGCACGAGGAAGTTGGCTTCTCTTAGTCAAGGGTGTACGGGGGCGGACATATCATTAATTTGCAGAGAATCAGCTTTACTTGCCCTTGAGGAGAACCTGGAGGCGTCAGTAATAAGTATGCAACATTTAGAAACTGCAGCTAGACACGTGAAGCCATCTGAAACTGCACCTTACCGAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGTTAATGTTGTATGTCAGCAGTCACGATCTAACTGGTTTTCTTTTTGGCCCCTTGTAAAATCAGCTGTGCTACTCTTTTCTCGTTTTCGTCACATGCTTGAAGGCGTCAAATGA 3156 41.41 MPSKGKKNAKTLSRLSNSNHSQSPVSRFTIPPVSQVSEDEFLSSIEEASSKYPFLIGKSAFVGRLIKDPVQSTACKVWLSESSMLASSFTQGAIVSVALSSEGGNFPLSSLADECGMHFGVDYGNSIIHEAGNYFALARIFSSGKELNDGVQLSTNLSFTLGCPTIGRVVFISPLKTHLCNDPLNDNGKLKSTEVNFLRIYNCKELFLDLASSTNVSTKDNLFPSSTIYSRKVHGRSESGNLTSPSTMRSASPKCDEVVSNLPSPFVHSLIESLGDDTVRKTLQTIASNELYKRCVLRGNLVTIPVLSDLCTFHVRGAKGLSGYDDSYDSVNSGSDDHFQHYSSDEYANCAFNIDQLTKVFINVQSTTVSETNQEIFPSNVEPQNLNIRAKVKPKVRKLGGLSKEYSVLKDIIISSSLNSTMSSLGFRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEEASQAAPAVVLIDELDAIAPARKDGGEELSQRIVATLLNLMDGIKRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYQKFKVSSDYHSFGRSVIAEEQHKFNEVAHKANDDHMISEPVLLQDEGSISGVCQNLVSSSISEHTFTSDPLTCVSSNEVVADSEDSFNSSEIKCKLKVVFEDFEIARMKVRPSAMREVILEVPKVKWEDIGGQMEVKAQLMETVEWPQKHQDAFKRIGTRPPAGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLSQGCTGADISLICRESALLALEENLEASVISMQHLETAARHVKPSETAPYRELSSRFQRLVCSSSQEVNVVCQQSRSNWFSFWPLVKSAVLLFSRFRHMLEGVK* 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5456909 5469058 - CsaV3_7G008770.1 Csa07g00778 536341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00778 1051 ProSitePatterns AAA-protein family signature. 886 904 IPR003960 GO:0005524|GO:0016887
Csa07g00778 1051 MobiDBLite consensus disorder prediction 234 253 - -
Csa07g00778 1051 Gene3D - 563 690 - -
Csa07g00778 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 990 IPR027417 -
Csa07g00778 1051 Pfam ATPase family associated with various cellular activities (AAA) 784 915 IPR003959 GO:0005524|GO:0016887
Csa07g00778 1051 Pfam ATPase family associated with various cellular activities (AAA) 433 562 IPR003959 GO:0005524|GO:0016887
Csa07g00778 1051 CDD AAA 750 916 - -
Csa07g00778 1051 Gene3D - 741 916 IPR027417 -
Csa07g00778 1051 CDD AAA 431 562 - -
Csa07g00778 1051 PANTHER - 61 1014 - -
Csa07g00778 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 618 IPR027417 -
Csa07g00778 1051 Gene3D - 917 987 - -
Csa07g00778 1051 Pfam AAA+ lid domain 938 983 IPR041569 -
Csa07g00778 1051 Pfam AAA+ lid domain 587 624 IPR041569 -
Csa07g00778 1051 MobiDBLite consensus disorder prediction 9 29 - -
Csa07g00778 1051 Gene3D - 380 562 IPR027417 -
Csa07g00778 1051 SMART AAA_5 780 918 IPR003593 -
Csa07g00778 1051 SMART AAA_5 429 565 IPR003593 -
Csa07g00778 1051 MobiDBLite consensus disorder prediction 1 29 - -
Csa07g00778 1051 PANTHER AAA-FAMILY ATPASE 61 1014 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02518 Csa-Chr5:26732053 Csa07g00778 Csa-Chr7:5456909 4.13E-36 dispersed
Csa07g00778 Csa-Chr7:5456909 Csa07g01802 Csa-Chr7:18281011 1.19E-35 dispersed
Csa07g00778 Csa-Chr7:5456909 Csa06g02599 Csa-Chr6:22912639 1.39E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00778 - - csv:101220574 2048.86