Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00783 ATGTATGCTAAGTGTGACAACATGTCTGATGCCTACAAGCTATTTAGCTTATTACCAGACCATAACTTACAATCTTACAATGCCATGATAATTGGGTATGCTCGGAATGAGCAAGGGTTTCAAGCTTTTAAGCTATTTCTTCAGTTGCAGAAGAACAGTTTTAGTTTTGATGAAGTATCTCTTTCTGGTGCATTAAGTGCAGCTGCAGTAATCAAAGGGCACTCTGAGGGGCTTCAACTACATGGGTTAGCCATCAAATCTAATTTATCGTCAAATATCTGTGTCGCAAACGCCATCTTGGATATGTATGGCAAATGTGGAGCTTTAGTTGAGGCTTCTGGCCTGTTTGATGAAATGGAAATAAGGGATCCGGTGTCTTGGAATGCTATCATCACAGCTTGTGAGCAGAATGAAAGTGAAGGGAAAACGCTCTCACATTTTGGTGCAATGCTACGTTCAAAGATGGAACCTGATGAGTTCACATATGGTAGTGTTTTAAAAGCTTGTGCAGGTCAGCGAGCTTTCAGTAATGGCATGGAGGTTCATGGAAGAATTATCAAATCTGGAATGGGTCTCAAAATGTTTGTAGGAAGTGCGCTCGTTGATATGTATTCCAAATGTGGAATGATGGAAGAGGCAGAAAAGATCCATTACCGGCTGGAAGAACAAACAATGGTCTCATGGAATGCAATTATTTCAGGATTTTCATTGCAAAAGAAAAGTGAAGATTCACAAAGATTTTTCTCTCATATGTTGGAAATGGGTGTAGAGCCCGACAACTTCACTTATGCAACTGTTCTAGACACTTGTGCTAATTTAGCTACTGTTGGACTAGGAAAGCAAATCCATGCACAAATGATCAAGCTGGAACTGCTATCAGATGTGTACATAACCAGCACTCTTGTTGACATGTACTCCAAATGTGGAAATATGCATGATTCTCTACTTATGTTTCGGAAAGCTCCCAAGCGGGATTCTGTCACATGGAATGCCATGATCTGTGGATTTGCCTACCATGGTCTTGGGGAAGAGGCTCTTGAGCTTTTTGAACATATGCTCCATGAGAATATAAAACCAAACCATGCAACTTTTGTTTCGGTCCTCCGAGCATGTTCGCACGTTGGAAATGCTAAGAAGGGCCTGTTTTATTTTCAGAAAATGGCAAGTATCTATGCTTTAGAACCTCAACTTGAGCACTACTCATGTATGGTGGATATTTTAGGGAGATCAGGCCAAGTAGAAGAAGCATTGAGACTAATTCAGGACATGCCATTTGAAGCAGATGCAATTATATGGAGAACTTTGCTTAGTATTTGCAAAATTCAGGGAAATGTAGAAGTTGCTGAAAAAGCAGCTAGTTCACTTTTGAAATTGGATCCAGAAGACTCGTCTGCTTACACCCTTCTATCAAATATATATGCTGATGCAGGCATGTGGCAACAAGTCTCAAAGATCAGACAAACAATGAGATCTCACAATTTGAAAAAGGAGCCAGGTTGCAGCTGGATTGAGGTAAAAGATGAAGTACATACATTTCTTGTTTGTGATAAAGCACATCCGAAATGTGAAATGATCTATAGCCTGCTTGATTTGTTGATTTGCGATATGAGAAGGTCTGGATGTGCCCCTGAAATAGACACCATACAAGTTGAGGAGGTTGAAGAAAATAGGCATCAAAAGGTCAAATCCAACGGATTTTCTTAG 1704 40.14 MYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFLVCDKAHPKCEMIYSLLDLLICDMRRSGCAPEIDTIQVEEVEENRHQKVKSNGFS* 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5499742 5503239 - CsaV3_7G008820.1 Csa07g00783 536346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00783 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Csa07g00783 567 PANTHER OS01G0913400 PROTEIN-RELATED 2 108 - -
Csa07g00783 567 TIGRFAM PPR: pentatricopeptide repeat domain 400 423 IPR002885 -
Csa07g00783 567 TIGRFAM PPR: pentatricopeptide repeat domain 25 57 IPR002885 -
Csa07g00783 567 TIGRFAM PPR: pentatricopeptide repeat domain 226 259 IPR002885 -
Csa07g00783 567 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Csa07g00783 567 Pfam PPR repeat 97 120 IPR002885 -
Csa07g00783 567 Pfam PPR repeat 198 222 IPR002885 -
Csa07g00783 567 Pfam PPR repeat 299 321 IPR002885 -
Csa07g00783 567 Pfam PPR repeat 25 53 IPR002885 -
Csa07g00783 567 Pfam PPR repeat 399 423 IPR002885 -
Csa07g00783 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Csa07g00783 567 Pfam E motif 444 504 IPR046848 -
Csa07g00783 567 PANTHER - 2 108 - -
Csa07g00783 567 Gene3D Tetratricopeptide repeat domain 1 74 IPR011990 GO:0005515
Csa07g00783 567 Gene3D Tetratricopeptide repeat domain 75 174 IPR011990 GO:0005515
Csa07g00783 567 Gene3D Tetratricopeptide repeat domain 175 275 IPR011990 GO:0005515
Csa07g00783 567 PANTHER - 108 549 - -
Csa07g00783 567 SUPERFAMILY TPR-like 307 481 IPR011990 GO:0005515
Csa07g00783 567 Pfam PPR repeat family 325 372 IPR002885 -
Csa07g00783 567 Pfam PPR repeat family 225 272 IPR002885 -
Csa07g00783 567 Gene3D Tetratricopeptide repeat domain 392 527 IPR011990 GO:0005515
Csa07g00783 567 Gene3D Tetratricopeptide repeat domain 276 391 IPR011990 GO:0005515
Csa07g00783 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Csa07g00783 567 PANTHER OS01G0913400 PROTEIN-RELATED 108 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00783 - - - csv:101220811 1134.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00783 Csa-Chr7:5499742 Csa05g02122 Csa-Chr5:24388702 1.18E-46 dispersed
Csa07g00783 Csa-Chr7:5499742 Csa03g01691 Csa-Chr3:12669403 3.76E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010060 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30