Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00785 ATGGATCGCTCCGCACTTACTGTTGGACCAGGAATGGACATTCCCATCATGCACGATAGCGATCGTTATGAGCTTGTGCGCGACATTGGCTCTGGAAACTTCGGTATTGCTAGATTGATGAGGGATAAGCAAACTGGAGAGCTCGTTGCCGTCAAGTACATCGAGAGAGGTGAGAAGATAGATGCAAATGTGAAGCGAGAGATAATAAACCACAGATCTTTAAGACATCCTAACATTGTCAGATTCAAAGAGGTGATCTTGACCCCAACTCATCTTGCAATTGTAATGGAATATGCATCTGGTGGAGAGCTCTTTGAACGGATCTGCAATGCTGGACGGTTCAGCGAGGATGAGGCACGTTTCTTCTTCCAACAACTTATATCTGGTGTTAGCTATTGTCATGCAATGCAAGTATGTCATCGTGATTTGAAATTGGAGAATACGTTGCTGGATGGAAGTCCTGCTCCTCGTTTGAAGATTTGTGATTTTGGATACTCAAAGTCTTCTGTGCTGCATTCACAGCCAAAATCAACGGTTGGGACCCCTGCATATATTGCTCCTGAGGTGTTGCTTAAGAAAGAGTATGATGGCAAGATTGCAGATGTGTGGTCGTGTGGGGTGACCTTATACGTCATGTTGGTCGGTGCATACCCCTTTGAGGACCCTGAGGACCCAAAAAACTTTCGAAAAACAATTCAGAGAATCCTAAATGTACAATACTCAATTCCCGATTACGTTCTTATCTCTCCCGAGTGCCGCCATCTGATCTCTAGGATTTTTGTTGCCGACCCAACTAAGAGGATTACAATTCCGGAGATAAGGAATCATGAGTGGTTTCTGAAGAATCTTCCAGCCGACCTTGTAGATGAAAACACAATAAACAGCCAATACGAAGAGCCCGATCAACCAATGCAAACCAGTGAAGAGATCATGCAGATAATAGCTGAAGCTGGGCTTCCTGCTGCAGGGACACAGAGTCTCAACCAATACCTTACCGGCAGCCTTGACATCGATGATGACATGGAAGACGATGAAGAGAGCGATGCTGATCTTGACCTCGATATCGACAGCAGTGGAGAAGTTGTTTATGCAATGTAA 1098 44.9 MDRSALTVGPGMDIPIMHDSDRYELVRDIGSGNFGIARLMRDKQTGELVAVKYIERGEKIDANVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIQRILNVQYSIPDYVLISPECRHLISRIFVADPTKRITIPEIRNHEWFLKNLPADLVDENTINSQYEEPDQPMQTSEEIMQIIAEAGLPAAGTQSLNQYLTGSLDIDDDMEDDEESDADLDLDIDSSGEVVYAM* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5514315 5517582 + CsaV3_7G008840.1 Csa07g00785 536348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00785 365 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00785 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Csa07g00785 365 Gene3D Transferase(Phosphotransferase) domain 1 99 287 - -
Csa07g00785 365 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00785 365 PANTHER SERINE/THREONINE KINASE 14 358 - -
Csa07g00785 365 SUPERFAMILY Protein kinase-like (PK-like) 21 314 IPR011009 -
Csa07g00785 365 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00785 365 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E-LIKE 14 358 - -
Csa07g00785 365 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Csa07g00785 365 CDD STKc_SnRK2-3 22 278 - -
Csa07g00785 365 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00785 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - csv:101209176 705.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01204 Csa07g00785 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01477 Csa-Chr2:14181637 Csa07g00785 Csa-Chr7:5514315 0 transposed
Csa03g00222 Csa-Chr3:1788904 Csa07g00785 Csa-Chr7:5514315 0 transposed
Csa04g02000 Csa-Chr4:19973756 Csa07g00785 Csa-Chr7:5514315 1.36E-178 transposed
Csa06g03140 Csa-Chr6:26819227 Csa07g00785 Csa-Chr7:5514315 0 transposed
Csa02g01204 Csa-Chr2:11843438 Csa07g00785 Csa-Chr7:5514315 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g470 . . . . . . . . . Cmo11g01342 Cma02g00437 . Car02g00291 . . Cpe04g00263 . Bhi05g01154 . . . . . . Cla02g00576 . . . . . . Cone12ag1115 Cone8ag1156 Cone3ag0926 . Lsi10g00574 Csa07g00785 Chy11g00432 Cme01g00025 Blo04g00493 . . Bda14g00524 Bpe15g00890 . Bma03g00525 . . Cmo02g00439 . Cma11g01769 . Car11g01080 . . Cpe05g01226 Bhi10g02071 . . . . . . . . . . . . . Lsi11g01030 Csa02g01204 Chy01g00031 Cme11g00299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78479 PF00069 Pkinase 4.40E-71 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00785 Csa_Chr07 FPKM 5.724895 5.091478 5.241791 5.118761 4.092659 3.964046 3.715157 4.243782 4.217626 4.009726