Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00789 ATGGAGAAGCAGATCAAGAACAACAACTACCTCTTACCACTACTTCTCCTGTCCCTCTTCTTCCAACTCTCACTCTCCGATAATACTTCTCACAAACACTTTGTCTTTATCCACGGATCCTGCCATGGCGCATGGTCCTGGTTTAAACTCCTCCCTCTCCTCCAATCCTCCGGTCACCGCGTCACCGCCCTCGACTTGGCCGCCTCCGGAATCGACCATCGAAATCCGGACTCTGTCCGATCCATTTCCCAGTACTTCCAGCCTCTGACTGACTTCATGTCAGCTCTCCCTCAGCACCAAAAGGTGATCCTCGTCGGGCATAGCCTGGGCGGATTGGTCGTGTCGAAAGCCATGGAGGACTTCCCGACGAAGATTTCCGCCGCCGTTTTCGTCACCGCTACGATGCCTGGGCCAGCTCTGAACATATCGACCATTTATTCGAAGGTATTTGAGAGGAATGAATCAATGATGGATAGCGTTTACTCCTACGGCGATGGCCGGAATCGGCCTCCCACTGCCTTCCTCTTTGGGTCGCGCTTTTTGGCTTCCAAAGTTTATCAGCGCAGCCCAGCTGAGGATTTAACACTGGCGACGTTGTTGATGAGAGCAGTGCCATTGTTCACCGAAAAAGACATGTCCGATGTATTGAAGCTATCGGAGAGAAATTACGGTTCCGTCAAGCGAGTATTCGTGGTGTCAGAAATGGATTTGGTTAGTAATATAGAATTTCAAAGGTGGATGATTGAGAACAACCCACCTGATCATGTGGTGGAGATAGAAGGATCAGATCATGTGGTGATGATGTCTAAGCCTTTCCAGTTGTGTGCTCATCTTCAACTCCTTGCTCAACCTAGACCTTAA 861 49.83 MEKQIKNNNYLLPLLLLSLFFQLSLSDNTSHKHFVFIHGSCHGAWSWFKLLPLLQSSGHRVTALDLAASGIDHRNPDSVRSISQYFQPLTDFMSALPQHQKVILVGHSLGGLVVSKAMEDFPTKISAAVFVTATMPGPALNISTIYSKVFERNESMMDSVYSYGDGRNRPPTAFLFGSRFLASKVYQRSPAEDLTLATLLMRAVPLFTEKDMSDVLKLSERNYGSVKRVFVVSEMDLVSNIEFQRWMIENNPPDHVVEIEGSDHVVMMSKPFQLCAHLQLLAQPRP* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5540440 5541682 - CsaV3_7G008880.1 Csa07g00789 536352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00789 286 PANTHER METHYLESTERASE FAMILY MEMBER 24 283 IPR045889 -
Csa07g00789 286 Pfam Alpha/beta hydrolase family 34 276 IPR000073 -
Csa07g00789 286 Gene3D alpha/beta hydrolase 26 283 IPR029058 -
Csa07g00789 286 PRINTS Epoxide hydrolase signature 38 56 IPR000639 GO:0003824
Csa07g00789 286 PRINTS Epoxide hydrolase signature 58 73 IPR000639 GO:0003824
Csa07g00789 286 PRINTS Epoxide hydrolase signature 104 117 IPR000639 GO:0003824
Csa07g00789 286 PRINTS Epoxide hydrolase signature 226 242 IPR000639 GO:0003824
Csa07g00789 286 PRINTS Epoxide hydrolase signature 259 281 IPR000639 GO:0003824
Csa07g00789 286 PANTHER ESTERASE PIR7A-RELATED 24 283 - -
Csa07g00789 286 SUPERFAMILY alpha/beta-Hydrolases 30 278 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00789 - - - csv:101221751 558.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01207 Csa07g00789 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02909 Csa-Chr6:25237721 Csa07g00789 Csa-Chr7:5540440 3.27E-71 dispersed
Csa06g02910 Csa-Chr6:25243558 Csa07g00789 Csa-Chr7:5540440 6.90E-72 dispersed
Csa06g02911 Csa-Chr6:25247322 Csa07g00789 Csa-Chr7:5540440 3.68E-71 dispersed
Csa07g00789 Csa-Chr7:5540440 Csa07g00793 Csa-Chr7:5551757 5.43E-75 proximal
Csa01g02222 Csa-Chr1:19259101 Csa07g00789 Csa-Chr7:5540440 6.77E-06 transposed
Csa01g02587 Csa-Chr1:22858333 Csa07g00789 Csa-Chr7:5540440 2.55E-43 transposed
Csa04g01026 Csa-Chr4:8036020 Csa07g00789 Csa-Chr7:5540440 1.76E-58 transposed
Csa05g03036 Csa-Chr5:30534961 Csa07g00789 Csa-Chr7:5540440 9.41E-60 transposed
Csa05g03110 Csa-Chr5:31082032 Csa07g00789 Csa-Chr7:5540440 1.61E-46 transposed
Csa05g03220 Csa-Chr5:31739819 Csa07g00789 Csa-Chr7:5540440 4.16E-54 transposed
Csa02g01207 Csa-Chr2:11888042 Csa07g00789 Csa-Chr7:5540440 1.17E-92 wgd
Csa06g02905 Csa-Chr6:25226076 Csa07g00789 Csa-Chr7:5540440 7.08E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g475 . . . . . . . . . . . . . . Sed08g2645 . . Bhi05g01157 Tan02g0874 Cmetu01g0432 . . . . . . . . . . . . Cone8ag1158 . . . Csa07g00789 . . . . . . . . . . . . . Cma11g01774 . . . . . . . . . . . . Cla09g01724 Cam09g1820 Cec09g1880 Cco09g1973 . . . . Csa02g01207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00789 Csa_Chr07 FPKM 13.859942 14.912228 9.440841 10.024259 6.125403 7.574065 5.010511 19.053968 21.771088 19.049019