Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00792 ATGGGCGATCTGGAGGATTTCATCCAAGCCCCGGAGCACCGCCCCAAACTCGCACTCTCCCATGCTGATGGAATCCCCACCATCGATCTCTCTCCAATCTTCAACTCACTACCCGGCAGCGATTTCCCCCACGATTTGGTCCACCAAATTGCCTCTGCTTGCACGGAGTGGGGATTCTTTCTGGTGGTTAACCACGGCGTCCCTCCCGAGAAGCGGCACCGTATAGAGGCCGCTGCCCGGGAATTTTTCGGCCAAAGTTTGGAAGAGAAGAGGAAAGTGAGGAGAAGCGAAGGGTTGGTGACGGGCTACTTTGATTCGGAGCTGACCAAGAACGTCAGAGATTGGAAGGAGGTGTTTGATCTCGTGGTGGAGGATCCCACAATTGTTCCGGCGTCGCCCGAGTCTGATGATGAGGAGTTGACTCAGTGGACTAATCAATGGCCGGAATACCCACCGGAATTCAGGGAGAGTTGCAAGGAATATGTTGAAGAATTAGAGAAACTTGGACACAAATTGATGGAACTACTCGCCCTTAGCTTGGGATTGTCCGCAAAAAGGTTTCAACACTATTTCAAACAGCAAACCAGTTTTTTGAGAATCAATCACTATCCCCCCTGCCCATCACCGGAGTTGACTCTCGGGGTTGGGCGCCACAAGGACCCCGGCGTCCTAACGGTGCTCGCCCAAGACGATGTTGGAGGACTGGAAGTGAAAAGGAAGAGAGATGGAGAGTGGATACGGGTCAAACCCGTACCCGATTCTTTCGTTGTGAATATTGGAGAGATTACTCAGGTTTGGAGCAATGAGAAGTATGAGAGTGTGGAGCATAGAGTTATGGTCAACAGCGAAAAGGATAGATATTCCATTCCTTTCTTCTTCAACCCATCTCATTCCACCATCGTTGAGCCTTTGAAAGAGCTGGTTGATTCCCAAAACCCTCCCAAATACAAATCTTACTCTTATGGAAAGTTTCTTACCAATAGACAACGCAGCAACTTCAAGAAACTTAATACTGACAACATTCAAATCTCTGATTTCAAGATCACCAACTAG 1053 48.91 MGDLEDFIQAPEHRPKLALSHADGIPTIDLSPIFNSLPGSDFPHDLVHQIASACTEWGFFLVVNHGVPPEKRHRIEAAAREFFGQSLEEKRKVRRSEGLVTGYFDSELTKNVRDWKEVFDLVVEDPTIVPASPESDDEELTQWTNQWPEYPPEFRESCKEYVEELEKLGHKLMELLALSLGLSAKRFQHYFKQQTSFLRINHYPPCPSPELTLGVGRHKDPGVLTVLAQDDVGGLEVKRKRDGEWIRVKPVPDSFVVNIGEITQVWSNEKYESVEHRVMVNSEKDRYSIPFFFNPSHSTIVEPLKELVDSQNPPKYKSYSYGKFLTNRQRSNFKKLNTDNIQISDFKITN* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5548437 5551140 - CsaV3_7G008910.1 Csa07g00792 536355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00792 350 Coils Coil 158 178 - -
Csa07g00792 350 Pfam non-haem dioxygenase in morphine synthesis N-terminal 25 149 IPR026992 -
Csa07g00792 350 Gene3D - 4 335 IPR027443 -
Csa07g00792 350 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE, NON-HEME DIOXYGENASE DOMAIN-CONTAINING PROTEIN-RELATED 6 340 - -
Csa07g00792 350 PRINTS Isopenicillin N synthase signature 50 67 - -
Csa07g00792 350 PRINTS Isopenicillin N synthase signature 218 239 - -
Csa07g00792 350 PRINTS Isopenicillin N synthase signature 283 301 - -
Csa07g00792 350 PRINTS Isopenicillin N synthase signature 320 338 - -
Csa07g00792 350 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 295 IPR005123 -
Csa07g00792 350 SUPERFAMILY Clavaminate synthase-like 7 334 - -
Csa07g00792 350 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 6 340 - -
Csa07g00792 350 Pfam 2OG-Fe(II) oxygenase superfamily 196 295 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00792 - - - csv:101209423 715.687
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00790 Csa-Chr7:5542035 Csa07g00792 Csa-Chr7:5548437 0 dispersed
Csa07g00792 Csa-Chr7:5548437 Csa03g01444 Csa-Chr3:10796440 6.31E-64 dispersed
Csa07g00792 Csa-Chr7:5548437 Csa07g00794 Csa-Chr7:5554043 1.57E-126 proximal
Csa07g00791 Csa-Chr7:5545224 Csa07g00792 Csa-Chr7:5548437 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g00792 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00792 Csa_Chr07 FPKM 2.749815 2.890712 9.180762 7.909633 141.175095 159.399078 140.561325 8.671429 7.392545 8.066316