Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00794 ATGGACCAAGACACCTTGGTCGTGGATTCTTCCTTCATCCAACCCATCCAGCACCGCCCCAAACTCTATCCCTTCCAACCGGCCACCGACCAAGTCCCAACCATAGATCTCTCCATCTCCCCCTCTCGCACCACCCAACACCTTGTCTCTGAAATAGCCTCTGCCTGCCAGAACTGGGGTTTCTTCCAGGTAATCAACCATGGAGTTTCACTCGAGACGCTCGCGCGATTCGAGAAAGCTGCCAAGTTATTTTTTGACCAGACGATGGAGGAGAAAAGGAAGGTGAAGAGAGATGCAGGTAATGCTGTGGGATTTTATGACGGTGAGAATACGAAAAACGTTAGAGATTGGAAGGAGGTCTTTGATTTCTTGGTTAAGGATGGGACGTTCTTTCCAGCTTCGCATGATCCAAATGATACGAAATTGAAGGTATTGTTTAATCATTGGCCGGAATATCCCCCTGGATTTAGGGAAATGTGCGAGGAGTATGCCAGAGAGTTGGAATTGCTAGCACATAAGCTACTGAGGTTGATTCTTTTGAGTCTAGGCTTATCTGGTGCTGATGGATTGAAGGGCTATTTCAATGACGAGCAAATGAGCTTGATGAGGTTGAATCGGTACCCTCCATGTCCGTCTCCGGATCTTGTGCTCGGCGTAGGCCGTCACAAAGATTCTGGTGCCTTGACAATCCTTGCTCAAGATGCTGTTGGAGGGCTGCAAGTGAGGAGAAAATCAGATGGACAGTGGATTCCTGTCAAACCAATCCCAAATGCCTATATCGTTAACATTGGCGATGTTGTTCAAGTTTGGAGCAATGACAAATATGAAAGTGTGGAGCACAGAGTGGTGGTGAATAGTGAGAAAGAAAGGTATTCGTTTCCATTTTTCTTCTTTCCAGCTCACCATATGATGGTGAAGCCATTGGAGGAGGTTGTGGATGAGCAAAACCCACCAAAATACAGAGAATACAACTTCGGAAAGTTTATTGCTTCGAGGAGCCACGGTAACGAGAACCAAGAAGTGGAAAACATCCAAATTCATCATTTCAGGGCCAGGCTGCATCAATAA 1068 46.44 MDQDTLVVDSSFIQPIQHRPKLYPFQPATDQVPTIDLSISPSRTTQHLVSEIASACQNWGFFQVINHGVSLETLARFEKAAKLFFDQTMEEKRKVKRDAGNAVGFYDGENTKNVRDWKEVFDFLVKDGTFFPASHDPNDTKLKVLFNHWPEYPPGFREMCEEYARELELLAHKLLRLILLSLGLSGADGLKGYFNDEQMSLMRLNRYPPCPSPDLVLGVGRHKDSGALTILAQDAVGGLQVRRKSDGQWIPVKPIPNAYIVNIGDVVQVWSNDKYESVEHRVVVNSEKERYSFPFFFFPAHHMMVKPLEEVVDEQNPPKYREYNFGKFIASRSHGNENQEVENIQIHHFRARLHQ* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5554043 5556293 - CsaV3_7G008930.1 Csa07g00794 536357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00794 355 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 7 342 - -
Csa07g00794 355 SUPERFAMILY Clavaminate synthase-like 10 332 - -
Csa07g00794 355 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 299 IPR005123 -
Csa07g00794 355 Pfam 2OG-Fe(II) oxygenase superfamily 201 299 IPR044861 -
Csa07g00794 355 PANTHER DIRIGENT PROTEIN 7 342 - -
Csa07g00794 355 Gene3D - 1 340 IPR027443 -
Csa07g00794 355 Pfam non-haem dioxygenase in morphine synthesis N-terminal 32 151 IPR026992 -
Csa07g00794 355 PRINTS Isopenicillin N synthase signature 52 69 - -
Csa07g00794 355 PRINTS Isopenicillin N synthase signature 222 243 - -
Csa07g00794 355 PRINTS Isopenicillin N synthase signature 287 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00794 - - - csv:101209915 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00791 Csa-Chr7:5545224 Csa07g00794 Csa-Chr7:5554043 4.41E-128 dispersed
Csa07g00794 Csa-Chr7:5554043 Csa03g01444 Csa-Chr3:10796440 3.81E-65 dispersed
Csa07g00792 Csa-Chr7:5548437 Csa07g00794 Csa-Chr7:5554043 1.57E-126 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g486 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g00794 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00794 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.095192