Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00809 ATGGAGGAAGAGAAGAAGCCACTGACGACCGCGACGGAACCTCCTAACAAACAAGTTCAAGAAATTGAAGAAGAAAGCAGAGTAAATGTAGAAGCACCGTCAAGAAGTAGCGGAGGAGGAGGAGGAGGAGGAGGCTGGGGAGGTTGGGGATTCTCAGCGTTTTCTGTTCTCTCAGATCTCCAGAAAGCCGCCGAAGAGATCTCCCGAAATGCTGCTGCTGCTGCTCAGACAGCAGCTAAAAGCATTGTAGACTTGAAAAATGAAGATGAGCATGGGGAGCCTTCTAAGGAGAAAGTAGGAGATTCTGCAGAAGAAAGTGAAAGCGAAGACGACAATGATAAGCTACGGAAATCTGCTTTGGAAAAATTAGAGAAGGCTAGCGAGGATTCAGTTTTTGGCCAGGGCTTAAAGGTTCTAGATACTTCTGTGGAGAATATAGCTTCAGGAGCATGGAAAGCCCTGGGAAGTGCATTAAGAGGGGGCAGTGATTTCGTTCACAAGCTTGAGAACTCAGCTGCAAATATTGCAGAAACCATTCAACATCAAGGAATACCAGCAGCAGCTGGTTCTGTTGCACCATCATTGTTGGAGAGAGGGAAAGCTCTCACAACGAAGGGAATGGAAGTTCTTGAGCTCGTTGGAAGGGAAACCATGGATTTACTGATTACAGAGACTGGAATTGAAGTTGAGAAGACCTCTAGTGAGAGCGAACCACAGGCCAAGGAGGATCATTTAGAAGATGATGAAGTGACATTTGATCGATGCTTTTATATATACGGAGGTCCAGAACAGTTAGAGGAGTTGGAGGCCCTATCCAACCACTATACTTTATTATATAACCGAAGGAAAGGAAAACTATCTCAGGACCAGAAGTCTGTATTTGATGGAAAGCTTAAACAGGTCCAACAAATTTTTAGTTTGGGTAATGCAATTGAAGAAAACAGTTCAAAATCAGAAAAAGGTAAAAAGTTGGAAGTTGGGGAAGAGGGAAATGATGAGATGAAAAGTTTATATGATTCTAGTGTCAGCAAGGCTGCTGAAATGGCTGCGGGGTATGGAAGTTCCATAGCCGAACTTGCTGTTCCTGAAATAATGCAGAGGACCGTTGACAAATTAGAATCACTTCATTCAGAAGGAGTCCATAGGGTCTCAGAAATGTGTTATTTTGCGGTGTCTCAATTGCTGATGCTTGGAAAATCCATTATAACAAATGCTAACAAAGTCGAGGAGGAGGAGGAGGACGACGACGAAGATGCTATAAAAATCCAATGGCCCGAAGATTCTGTTGAAAAAGCTGAAATCATTAGATTAAAGGCTTTATTGATGATAGGATATGTAGATGCACTATCCAAAAGCTTCATTACAGGTCTGTCTGATGTGTCAAAAGCATATCAAGCTGCCATGAGCGCTGCCCCAGCTGATTCTCACAAAAGTCCTCTGCAAATATCAGTACAAGACAAGGCCAATGCCTTCTCCGAGCATCTTCAGGCCGATCAAACCACAGCTTTCTGCAAAATCCAGGATGGGCTTCAATACTTGTCTTATCTTGTTCTCTCAACCTCAATGCCAGCTGCTTAA 1578 43.54 MEEEKKPLTTATEPPNKQVQEIEEESRVNVEAPSRSSGGGGGGGGWGGWGFSAFSVLSDLQKAAEEISRNAAAAAQTAAKSIVDLKNEDEHGEPSKEKVGDSAEESESEDDNDKLRKSALEKLEKASEDSVFGQGLKVLDTSVENIASGAWKALGSALRGGSDFVHKLENSAANIAETIQHQGIPAAAGSVAPSLLERGKALTTKGMEVLELVGRETMDLLITETGIEVEKTSSESEPQAKEDHLEDDEVTFDRCFYIYGGPEQLEELEALSNHYTLLYNRRKGKLSQDQKSVFDGKLKQVQQIFSLGNAIEENSSKSEKGKKLEVGEEGNDEMKSLYDSSVSKAAEMAAGYGSSIAELAVPEIMQRTVDKLESLHSEGVHRVSEMCYFAVSQLLMLGKSIITNANKVEEEEEDDDEDAIKIQWPEDSVEKAEIIRLKALLMIGYVDALSKSFITGLSDVSKAYQAAMSAAPADSHKSPLQISVQDKANAFSEHLQADQTTAFCKIQDGLQYLSYLVLSTSMPAA* 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5684567 5689467 - CsaV3_7G010070.1 Csa07g00809 536372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00809 525 Coils Coil 57 77 - -
Csa07g00809 525 MobiDBLite consensus disorder prediction 83 115 - -
Csa07g00809 525 MobiDBLite consensus disorder prediction 66 115 - -
Csa07g00809 525 PANTHER BAT2 DOMAIN PROTEIN 1 525 - -
Csa07g00809 525 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00809 - - - csv:101222694 947.192
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g497 . . . . . Bpe12g00068 . . Cmo19g00646 Cmo11g01334 . . . . Sed10g2061 Cpe04g00258 Cpe15g00510 Bhi05g01161 Tan02g0868 Cmetu01g2091 . Hepe02g0557 . . Cla02g00569 Cam02g0599 Cec02g0599 Cco02g0610 Clacu02g0595 Cmu02g0593 Cre02g0922 Cone12ag1119 Cone8ag1164 . . . Csa07g00809 . Cme01g00016 . Blo13g00561 Bda15g00025 . . . . . . . . Cma11g01776 Cma19g00628 Car11g01075 Car19g00479 . . . . . . . . . . . . . . . . . . Chy01g00020 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007446 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00809 Csa_Chr07 FPKM 77.326859 81.490433 53.651867 55.243889 128.329437 127.760941 132.21077 38.059097 36.743614 35.563366