Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00816 ATGGTGATGGAACCACGGAATAATCATGGATTGCATCGGAAGCGATTTGGAGCTTATTTGCAGTCCGACCCCGCGATTTTTGCCGGCGATGACAACGATTTCTCTCCTCGCCACAGCAATGCCTCTGCTGCCACTAGTCCGGTGTATAACTACGACAAATCGCCCGCCAGTGGTGATGCTTCGCCGTATTTGATGTCGCCCTGGAATCAGTCTACTTCACCGTATTCGAAATCTCCCTGGACCCTTCGCTCGGGGATGAATTTGTACGACGATGAATTTTATGCTCAGAGTGGTCTCATCGGCTCTCTGGTGCGCGAGGAAGGTCATGTGTATTCGTTGGCGGTAGCAGGGGATTTGTTATACACTGGATCGGATAGCAAGAACATTCGTGTGTGGAAGAATTTGAAGGAGTATACTGGATTTAAATCAAACAGTGGATTGGTGAAGTCGATAATTTTGTGTGGAGATAGAATTTTCACGGGACATCAAGATGGAAAGATTCGTATCTGGAAAGTTTCGTCCAAGAATCCGAAATCTCATAGCCGAATCGGAAGTTTACCGACGTTGAAGGAATTCGTCAAAAGCTCGATGAACCCAAAAAATTACGTCAAAGTCCGGCGCAATCGCAACGTCCTCCGTATAAAGCATTTCGACGCCATTTCCTCGATGAGCCTAAACGAGGAGTTAGGGCTTTTATACTCCGGATCTTGGGACAAAACAATGAAAGTCTGGCGAATCGCAGATTCAAAATGCCTCGAATCAATCACCGCTCACGATGACGCCGTGAACGCCGTTGCATCGGGATTAGAAAGCCTCGTGTTCACCGGATCCGCTGACGGGACGGTGAAGGTGTGGAGGAGAGAGCTACAGGGGAAAGGTACGAAGCATTTTCTGGTTCAGGTGTTGCTGAAGCAAGAAACTGCGATAACGGCGTTGGTTGTGAACAAATCATCGGCAGTTTTGTACTGCGGCTCATCAGAGGGAGTGGTGAATTATTGGGAGAGCGAGAAGCATTTATCACACGGCGGCGTCCTCCGGGGCCATAAACTAGCTGTGCTGTGTTTAGCGACGGCCGGAAACTTGGTGTTCAGTGGATCGGCAGACAAAAACATCTGCGTGTGGAGGAGGGAGGAGAACACAGGATCTCACACGTGTCTTTCGGTGTTAACAGGCCACTCAGGACCGGTCAAATGCTTAGCCGTTAAGGAAGACGAAGAAGAATCGGCATCGTCACCGGAAGAAGAAAGCGAAGTGAAAAAGGTGTACGGAAGCTACAAGAAGCGGCGGTGGATTGTGTACAGTGGTAGCCTAGATCGGTCGGTGAAGGTGTGGCGCGTGGCGGAGAACGCGCCGGAGCTGTTGAAAATTCGGGAGGCGGATAAGGCATACTTGAACAAGAAGTAG 1404 49.72 MVMEPRNNHGLHRKRFGAYLQSDPAIFAGDDNDFSPRHSNASAATSPVYNYDKSPASGDASPYLMSPWNQSTSPYSKSPWTLRSGMNLYDDEFYAQSGLIGSLVREEGHVYSLAVAGDLLYTGSDSKNIRVWKNLKEYTGFKSNSGLVKSIILCGDRIFTGHQDGKIRIWKVSSKNPKSHSRIGSLPTLKEFVKSSMNPKNYVKVRRNRNVLRIKHFDAISSMSLNEELGLLYSGSWDKTMKVWRIADSKCLESITAHDDAVNAVASGLESLVFTGSADGTVKVWRRELQGKGTKHFLVQVLLKQETAITALVVNKSSAVLYCGSSEGVVNYWESEKHLSHGGVLRGHKLAVLCLATAGNLVFSGSADKNICVWRREENTGSHTCLSVLTGHSGPVKCLAVKEDEEESASSPEEESEVKKVYGSYKKRRWIVYSGSLDRSVKVWRVAENAPELLKIREADKAYLNKK* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5720257 5723441 - CsaV3_7G010140.1 Csa07g00816 536379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00816 467 Gene3D - 80 207 IPR015943 GO:0005515
Csa07g00816 467 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Csa07g00816 467 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Csa07g00816 467 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Csa07g00816 467 Pfam WD domain, G-beta repeat 384 444 IPR001680 GO:0005515
Csa07g00816 467 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Csa07g00816 467 Pfam WD domain, G-beta repeat 250 285 IPR001680 GO:0005515
Csa07g00816 467 Pfam WD domain, G-beta repeat 343 374 IPR001680 GO:0005515
Csa07g00816 467 Pfam WD domain, G-beta repeat 107 133 IPR001680 GO:0005515
Csa07g00816 467 Gene3D - 208 294 IPR015943 GO:0005515
Csa07g00816 467 CDD WD40 107 445 - -
Csa07g00816 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 285 - -
Csa07g00816 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 285 IPR001680 GO:0005515
Csa07g00816 467 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 5 460 IPR045182 -
Csa07g00816 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 384 IPR001680 GO:0005515
Csa07g00816 467 SMART WD40_4 207 245 IPR001680 GO:0005515
Csa07g00816 467 SMART WD40_4 338 375 IPR001680 GO:0005515
Csa07g00816 467 SMART WD40_4 96 133 IPR001680 GO:0005515
Csa07g00816 467 SMART WD40_4 134 171 IPR001680 GO:0005515
Csa07g00816 467 SMART WD40_4 382 445 IPR001680 GO:0005515
Csa07g00816 467 SMART WD40_4 295 334 IPR001680 GO:0005515
Csa07g00816 467 SMART WD40_4 248 286 IPR001680 GO:0005515
Csa07g00816 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 254 IPR001680 GO:0005515
Csa07g00816 467 SUPERFAMILY WD40 repeat-like 102 450 IPR036322 GO:0005515
Csa07g00816 467 Gene3D - 295 451 IPR015943 GO:0005515
Csa07g00816 467 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 5 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00816 - - - csv:101202896 927.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01501 Csa-Chr2:14344761 Csa07g00816 Csa-Chr7:5720257 4.09E-176 dispersed
Csa02g02011 Csa-Chr2:18654351 Csa07g00816 Csa-Chr7:5720257 1.06E-163 dispersed
Csa03g02376 Csa-Chr3:21608608 Csa07g00816 Csa-Chr7:5720257 4.82E-70 dispersed
Csa05g02258 Csa-Chr5:25225144 Csa07g00816 Csa-Chr7:5720257 2.70E-07 dispersed
Csa07g00816 Csa-Chr7:5720257 Csa03g04173 Csa-Chr3:36627485 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00816 Csa_Chr07 FPKM 3.733514 3.829739 7.822074 8.55477 16.792601 16.012697 16.317417 13.539899 12.165653 12.376144