Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00820 ATGGAAATGGTAAAGGGGAATAAACAGCAAATTTCTGATGGGGATGCTCAGATTTCCTTAAAGCAGGAGATTCTACAGCTTGAAGAACAATTACAAAGCCAGTTCGCCACTCGCCATGCCTTGGAGAAAGCAATCAATTTTCAGCCTCTATCGCTTTACTCCGCCACCGAAGACGCGATACCAGAGGCTGAGATGGAACTGATTAAACAGATAGCGGTCTTGGAGTTAGAAGTCGTTTATTTGGAAAAATATCTTCTCTCTCTATACCGTCGAACTTTCAATCAACAAGTGTCCTCTTTTTCTACCATGGATGATAGGCTTGAATCATATATTGAGCCTAATAACGTGATAGAAGGAGAACATTCTTGTATTCATTCTGACCATATCGGGTCACCAGAAACTTTATTTGATAATCAATCAAAAGGAAGAAACGTAGTTGAGGAACCAGAGAATCTGTCGCACTTGCATCGCAGCAATTCATCTCTGTCACAGAGATCGCTCGGTTCATCTAGAAACTACTCTCTGTCAAAGTCTATGGCTAAAGCAGTAGATTCATACCATTCCTTTCCATTATCAATGCTGGAGCAATCTCGAATTGATGTTCCGAGTTCTACAAGCCTTGGGGAGCATCTCGGTGCCTGTTTATCCATTCGAGTTGACGAGTCCCCTAACTGGCTTTCCGAGGAGATGATCAAGTCCATCTCTGCAATATATCGTGAACTTGCCGAACCTCCTTTGATGAATCACAACAATCCTTCTCCGATCTCACCTTTGTCATCCATGTATGAACTTTCTTCACAAGACTTTGGCAGTATGAGGAACTACGAGAAGTCACTCAACTCGCATTTTGAGAACCCTTTTCACACTGAAGAATTTATTGCACCATATGACACAATGTTGAAAGTGCAATGGATTTCGAGAGAGAGAAAAAATGACTCAGATATCAACCACATGCTACAAGGTTTCAGATCACTTATTTTTCGGCTTAAAGAAGTCAAACTCAAAGCGATGAAACATGACGAAAAGCTTGCGTTTTGGATTAATGTACACAACACACTTGTAATGCATGCTTATCTGCAATATGGGATCTCCAAACATTGTTTGAAGAGAATATCTTTGATACTCAAGGCTGCATACAATATTGGGGGCCACATAATAAGTGTAGATAAGATACAAAGCTCAATTCTTGGGTGTCGTTTGCCTCGTTCAGGACAGTGGTTGCACCTGTTCCTCTCGTCAAAAACGAAATTTAAGGTCAACGATGTACAAAAGTCCTTTCCAATCAACCACCCTGAACCTCGGTTATACTTTGCTCTATGTTGTGGGAGTCATTCTGATCCTGCGGTACGTATCTATACGGCGAAGAGGGTGAATGAGGAGCTGGAGGTTGCAAAAGAAGAGTACATCCTTTCAAATTTGAGGGTACACAAAGGGCAGAAAATTCTTCTCCCAAAGATCGTGGAGTCTTTTGCTAAGGATTCTGGCCTATGCCTGGAAGATTTGGAGAACACTGTGGAATGTCTAAGGTCCAAGAGGCGGATAAATGACATTCAGCAGCGGCAACGAAAGAAGTTATGGAAGAGTATTGGATGGATACCTCATAACTTCACCTTCAGCTTTCTGCTGCCCAACGAATTGTCATGCCAATCCTTGTCTCGATAG 1662 42.0 MEMVKGNKQQISDGDAQISLKQEILQLEEQLQSQFATRHALEKAINFQPLSLYSATEDAIPEAEMELIKQIAVLELEVVYLEKYLLSLYRRTFNQQVSSFSTMDDRLESYIEPNNVIEGEHSCIHSDHIGSPETLFDNQSKGRNVVEEPENLSHLHRSNSSLSQRSLGSSRNYSLSKSMAKAVDSYHSFPLSMLEQSRIDVPSSTSLGEHLGACLSIRVDESPNWLSEEMIKSISAIYRELAEPPLMNHNNPSPISPLSSMYELSSQDFGSMRNYEKSLNSHFENPFHTEEFIAPYDTMLKVQWISRERKNDSDINHMLQGFRSLIFRLKEVKLKAMKHDEKLAFWINVHNTLVMHAYLQYGISKHCLKRISLILKAAYNIGGHIISVDKIQSSILGCRLPRSGQWLHLFLSSKTKFKVNDVQKSFPINHPEPRLYFALCCGSHSDPAVRIYTAKRVNEELEVAKEEYILSNLRVHKGQKILLPKIVESFAKDSGLCLEDLENTVECLRSKRRINDIQQRQRKKLWKSIGWIPHNFTFSFLLPNELSCQSLSR* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5765785 5770205 + CsaV3_7G010180.1 Csa07g00820 536383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00820 553 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 2 547 - -
Csa07g00820 553 MobiDBLite consensus disorder prediction 146 167 - -
Csa07g00820 553 Pfam Protein of unknown function, DUF547 335 469 IPR006869 -
Csa07g00820 553 Pfam Leucine-zipper of ternary complex factor MIP1 16 95 IPR025757 -
Csa07g00820 553 PANTHER UNCHARACTERIZED 2 547 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00820 - - - csv:101203131 1048.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01488 Csa-Chr2:14270025 Csa07g00820 Csa-Chr7:5765785 1.10E-136 dispersed
Csa05g00427 Csa-Chr5:2830620 Csa07g00820 Csa-Chr7:5765785 1.39E-57 dispersed
Csa06g02926 Csa-Chr6:25357315 Csa07g00820 Csa-Chr7:5765785 9.88E-43 dispersed
Csa07g00820 Csa-Chr7:5765785 Csa06g02879 Csa-Chr6:25048053 7.16E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1128 Cone8ag1175 . . . Csa07g00820 . . Blo04g00500 . . Bda14g00534 . . Bma03g01401 . . . . . . . Car19g00488 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009608 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00820 Csa_Chr07 FPKM 3.547761 2.534183 0.734442 2.025815 5.28971 4.478347 4.582474 3.284134 4.02778 2.031612