Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00822 ATGGAACTTTCTTTGGGACCCATCATTATCCACATGGTATGTGGATTGTGGACGATGCCATTGGTGCCAAGCTCAGGAACTAGACTTAAATTCTCTTCAATGGAGTGTACCTGCAGTTCTCTGGGGTCACCGGCTTTAACCACAGTGCCTTCCTCTTTAGTTAGAACTGCGTTCTTAGAGAAGTCTGTGTTGAATGCTCAGCCCTTGAAGTTATCGAATAAGAAGACATTCCCACTTCCTGGAAGGCTCAAATTTCTTCACACCAGAGCTCAAGCTTCTTCCAGCACAAGCAATTTTAGCTCAGGGGCAGCTCCCACAATTTCAAAGAAGGAAGATTCAAAAAACGAGGATCTTGTATTTGTTGCTGGTGCTACAGGAAAAGTTGGTTCAAGAACGGTGAGGGAGCTTTTGAAACTTGGATTTCGGGTAAGAGCCGGTGTAAGGAGTTCTCAGAAAGCAGAAACTCTTATTGAGAGTGTCAAAAAGATTAATCTTGATGAAGCTGTAGAAAAGCTTGAAACTGTGGTATGTGACTTGGAGAAACCAAATCAGATTGGAGCTGCGATAGGGAATGCATCAATAGTTATTTGCTGCATTGGTGCAAGTGAGAAGGAGATTTTTGATATTACTGGACCTTATCGAATTGACTATCTGGCTACCAAAAATTTGGTTGAAGCAGCAACTGTTGTAAAAGTGAAGCACTTTGTTCTGCTTACGTCCCTGGGAACCAACAAGATTGGATTTCCTGCTGCCATTCTTAATTTGTTTTGGGGAGTCCTATTGTGGAAAAGGAAGGCAGAAGAAGCATTGATTGCAAGTGGTCTTCCTTATACAATAGTGAGACCTGGAGGCATGGAGAGACCTACAGATGCGTTCAAGGAAACTCATAATACTACTCTTTCGCCAGAAGATACCTTATTTGGTGGTCTAGTGTCAAACCTTCAGGTTGCAGAGCTATTGGCATGCATTGCAAAAAATCCTGGTCTTTCATACTATAAAGTGCTAGAAGTAATTGCTGAGACAACTGCACCATTGATTTCCCTGGAGGATCTTCTTAAAAAAATACCATCTAAAGTTGCAAATGTTTTCCCAGAGAAGGAATATGGTGCTGCACAAACTGTCGACTCATCTCCAAAACAGTCGAGTATTGCCAAAGAAAAGGAGTCAGCCGAAGAAAATGTGACAGAACAGCCACCATCTCAAAGTGTTATATCAGAACAGTTGAGCATCACAAAGGAAAAAGAATCAGCAGTAGCAAATGCTACAAAACAGTCATCATCACCCTACATTGCGTATGAGGATTTAAAACCTCCAACATCTCCTACTCCAGCTGCACCTGTTGGGAAAAAAGATTCAAATGTTGTCGAAGGAGTCGCATCTAGTGCTCAAACTAGTTCAGTAGAGGCGTCTTCTGAGATTGCTGAGGCAAATCCCCCACCTGCACCTGCTCCTGAAAAAGCAGTGACATCGAAACCTCTCTCCCCTTATACAGCATATGAAGATTTAAAGCCTCCTACATCACCATCTCCTAGTGTACCTTCCCTATCATTTTCTTCAGCATCTACCTCAAACGGTCCACCTCAACCTGCTACCTATGCCATAAACAGCACATTGGCGATTCCAGAGGCAGAAGACTCAAAGAGTGAAGCACATCTTCCCAAGCCGAAGAAACAACCACTGTCACCTTTTACCATGTATGAGGATTTGAAGCCTCCAGCATCTCCGACTCCATCTCTTTGA 1740 43.05 MELSLGPIIIHMVCGLWTMPLVPSSGTRLKFSSMECTCSSLGSPALTTVPSSLVRTAFLEKSVLNAQPLKLSNKKTFPLPGRLKFLHTRAQASSSTSNFSSGAAPTISKKEDSKNEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSSQKAETLIESVKKINLDEAVEKLETVVCDLEKPNQIGAAIGNASIVICCIGASEKEIFDITGPYRIDYLATKNLVEAATVVKVKHFVLLTSLGTNKIGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGGMERPTDAFKETHNTTLSPEDTLFGGLVSNLQVAELLACIAKNPGLSYYKVLEVIAETTAPLISLEDLLKKIPSKVANVFPEKEYGAAQTVDSSPKQSSIAKEKESAEENVTEQPPSQSVISEQLSITKEKESAVANATKQSSSPYIAYEDLKPPTSPTPAAPVGKKDSNVVEGVASSAQTSSVEASSEIAEANPPPAPAPEKAVTSKPLSPYTAYEDLKPPTSPSPSVPSLSFSSASTSNGPPQPATYAINSTLAIPEAEDSKSEAHLPKPKKQPLSPFTMYEDLKPPASPTPSL* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5775991 5786973 + CsaV3_7G010200.1 Csa07g00822 536385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00822 579 MobiDBLite consensus disorder prediction 369 579 - -
Csa07g00822 579 Gene3D - 115 359 - -
Csa07g00822 579 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 39 521 IPR044719 -
Csa07g00822 579 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 524 578 IPR044719 -
Csa07g00822 579 MobiDBLite consensus disorder prediction 456 472 - -
Csa07g00822 579 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 118 353 IPR036291 -
Csa07g00822 579 Pfam NAD(P)H-binding 123 327 IPR016040 -
Csa07g00822 579 CDD SDR_a5 119 341 - -
Csa07g00822 579 MobiDBLite consensus disorder prediction 394 429 - -
Csa07g00822 579 MobiDBLite consensus disorder prediction 512 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00822 - - - csv:101212052 1064.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01500 Csa-Chr4:14730580 Csa07g00822 Csa-Chr7:5775991 9.17E-14 dispersed
Csa06g03778 Csa-Chr6:30034909 Csa07g00822 Csa-Chr7:5775991 1.03E-31 dispersed
Csa07g00822 Csa-Chr7:5775991 Csa06g01461 Csa-Chr6:12418387 7.61E-13 transposed
Csa07g00822 Csa-Chr7:5775991 Csa07g00804 Csa-Chr7:5638458 7.61E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g547 . . . . . . . . Cmo19g00657 . . . . . . . Cpe15g00520 . . . . . . . . . . . . . . . Cone8ag1176 . . . Csa07g00822 . . . . . Bda14g00535 . . Bma03g00535 . . . . . . . Car19g00490 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00822 Csa_Chr07 FPKM 23.96529 28.069254 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0