Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00824 ATGGCGGTCGGACCTCCGGTTCTCTCCCACTCATTCCTCGCCCTCTATTCTTTCTCTCACTTCACCACTCCCACTCCGACTACCAGATCTCGCCATCCTCATCTTCATCCTCCATCCATCAACTTCCGCACTTCACATCACCAAAACATCCGTTACCTCAAATCCCTGAACGTCATCGATCCCCAAACCAGGTTTCACTCTCCCGACGCCGTCCACCAAATCCTTACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCCGATTTCCCCAGACTCGCCTTCCTCTGCCCTAACCTCTTCACTTCAAACTTCGATACCACCGACATTGCCCCCGTTTTCCAATTCCTCGCCACTGATATATCCGCTTCCCTTCAAGAATCGCGCGGATTGATCCTCCGATGCCCTAAGATTCTCTTCTCCGACGTCGAATTGTGTCTCAAGCCGACGCACAGGTTTTTGAAGCAGTTAGGGATCGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCATCTTCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATCAGATTCTTCCAGGAGATCGGATTCTCGCACGAGGAGGCGTCAAAGGTTTGTGGGAGAATGCCGGCGATGTTCGGGTACAGTGTGAAGGAGAATTTGAAGCCTAAGTACGAGTATTTCGTGAAGGAGATGGAGAGGGATTTGGAGGAATTGAAAGGGTTTCCTCAGTATTTCGGGTTTAGTTTGGAAGGAAGAATTATGCCTAGACATTTGCATTTGAAACAAAGGGGCCTTCATATTCCTCTCAATAGTATGTTGTTGTGGAGTCACAATAGGTTTTACTCTAAATGGAAATGA 849 48.29 MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVIDPQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLATDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5807578 5808426 - CsaV3_7G010220.1 Csa07g00824 536387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00824 282 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 23 282 - -
Csa07g00824 282 PANTHER CGI-12 PROTEIN-RELATED 23 282 IPR003690 GO:0003690|GO:0006355
Csa07g00824 282 Pfam mTERF 131 277 IPR003690 GO:0003690|GO:0006355
Csa07g00824 282 Gene3D Transcription termination factor 3, mitochondrial 44 282 IPR038538 -
Csa07g00824 282 SMART mt_12 166 194 IPR003690 GO:0003690|GO:0006355
Csa07g00824 282 SMART mt_12 232 263 IPR003690 GO:0003690|GO:0006355
Csa07g00824 282 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Csa07g00824 282 SMART mt_12 92 125 IPR003690 GO:0003690|GO:0006355
Csa07g00824 282 SMART mt_12 199 231 IPR003690 GO:0003690|GO:0006355
Csa07g00824 282 SMART mt_12 56 87 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00824 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101203623 567.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02715 Csa-Chr6:23785937 Csa07g00824 Csa-Chr7:5807578 1.80E-38 dispersed
Csa07g00824 Csa-Chr7:5807578 Csa06g02871 Csa-Chr6:24990355 2.05E-12 dispersed
Csa07g00824 Csa-Chr7:5807578 Csa07g00224 Csa-Chr7:1770382 5.95E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g583 . . . . . . . . . . . . . . . Cpe04g00251 . . . . . . . . . . . . . . . . . . . . Csa07g00824 . . . . . . . . . . . . . . . Car11g01067 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012267 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32296 PF02536 mTERF 3.80E-31 No_clan Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00824 Csa_Chr07 FPKM 5.593481 8.311883 0.874037 1.229544 4.359384 3.306068 3.088164 4.286347 4.372359 4.532743