Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00826 ATGATAATTTCTAATTCTAATGTAAATTTTAACAACTTAAGAAAAGAAAGGAAAAAAAATAAAAAAGGAAGAAGAAGACAAAAGGACATTGTTGAGTTTGTGATAAATGGAGCAAGAAGAAGAAGAAGAAGAAGAAAGGGGCCATTTTTGTCTGAGCTTGCGACTGGAAATTCAGCTCTCAAATTACTCTCTTCCATGGCGTTCTCTATGCAACTTTATCGTCTTCCCACTCGTACGGATGCAGCCATGCCTGAGAATTTCACCGCCGTTCGATCACTCCGCTACAGGAAGCCTATGTCTGTGAGATGCGATGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCGGCTGTGGATTCCAATTTTGACGCCAAGGTGTTCCGGAGGAACTTGACGAAGAGTGACAACTACAACCGGAAAGGCTTTGGTTACAAGGACGAAACTCTGGCGCTCATGAATCGCGAGTATACAAGTGATATCATAAAGACTCTCAAAGAAAATGGATTTGAGTATACGTGGGGAGATGTTACTGTAAAACTGGCGGAAGCGTATGGATTTTGTTGGGGAGTCGAGCGAGCAGTTCAGATTGCTTATGAAGCGAGAAAACAATTTCCTGATGAGAAAATCTGGTTAACTAATGAGATTATTCACAATCCAACTGTTAACAAGCGTTTGGAGGAGATGGAAGTCCAAAACATTCCACTTGAGGACGGAAGGAAACAGTTTGAAGTGGTTGATAAGGGTGATGTGGTGATTTTGCCTGCATTTGGAGCAGCGGTGGATGAGATGTTGACATTGAGTGAAAAAAAGGTGCAAATCGTTGATACAACTTGCCCATGGGTTTCAAAGGTTTGGAATGTTGTTGACAAGCACAAAAAAGGCGATTATACTTCAATCATTCACGGTAAATATGCTCATGAAGAAACTGTAGCGACGGCATCATTTGCTGGGACATTTATAATTGTAAAGAACATGGCAGAGGCAATTTACGTGTGTGACTATATTCTTGGAGGTGAACTTGATGGATCCAGTTCAACCAAAGAAGAGTTTATGAAGAAATTCAAAAATGCAGTCTCAAAAGGTTTTGACCCAGATGTTGACCTGTTAAAGGTTGGGATAGCAAATCAAACCACAATGCTCAAGGGAGAAACAGAAGAGATTGGTAAATTAGTTGAAAGAACTATGATGCGCAAGCATGGAGTTGAAAACGTCAATGAGCACTTCCTCAGTTTCAATACAATATGTGATGCTACTCAAGAGCGTCAAGATGCAATGTACAAGCTAGTAGAGGGAAAACTGGATCTCATGTTAGTTGTTGGTGGATGGAATTCCAGTAACACTTCTCATCTTCAAGAGATAGCGGAGGAGCGAGGAATTCCATCTTACTGGATTGATAGTGAGCAGAGAATAGGTCCAGGAAACAGAATAGCTTACAAACTGAATCATGGGGAGTTAGTTGAAAAGGAGAACTGGCTACCCAAGGGTCATATCACGATCGGTGTCACATCCGGGGCTTCAACCCCCGATAAGGTCGTAGAAGATGCTCTTATCAAAGTCTTCGACATTAAGCGCGAGGAAGCTTTGCAGTTTGCATAA 1602 41.51 MIISNSNVNFNNLRKERKKNKKGRRRQKDIVEFVINGARRRRRRRKGPFLSELATGNSALKLLSSMAFSMQLYRLPTRTDAAMPENFTAVRSLRYRKPMSVRCDGDSSSSSSSSSSSAAVDSNFDAKVFRRNLTKSDNYNRKGFGYKDETLALMNREYTSDIIKTLKENGFEYTWGDVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWLTNEIIHNPTVNKRLEEMEVQNIPLEDGRKQFEVVDKGDVVILPAFGAAVDEMLTLSEKKVQIVDTTCPWVSKVWNVVDKHKKGDYTSIIHGKYAHEETVATASFAGTFIIVKNMAEAIYVCDYILGGELDGSSSTKEEFMKKFKNAVSKGFDPDVDLLKVGIANQTTMLKGETEEIGKLVERTMMRKHGVENVNEHFLSFNTICDATQERQDAMYKLVEGKLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPKGHITIGVTSGASTPDKVVEDALIKVFDIKREEALQFA* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5816050 5820837 - CsaV3_7G010240.1 Csa07g00826 536389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00826 533 CDD lytB_ispH 180 518 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Csa07g00826 533 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 178 525 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Csa07g00826 533 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 66 531 - -
Csa07g00826 533 Gene3D - 414 532 - -
Csa07g00826 533 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 180 518 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Csa07g00826 533 Pfam LytB protein 180 518 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Csa07g00826 533 Gene3D - 280 413 - -
Csa07g00826 533 Gene3D - 189 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00826 K03527 ispH, lytB; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] - csv:101212295 927.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01228 Csa-Chr2:12033441 Csa07g00826 Csa-Chr7:5816050 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g548 . . . . . . . . Cmo19g00658 Cmo11g01326 . . . . Sed10g2080 Cpe04g00253 Cpe15g00521 Bhi05g01181 Tan02g0845 Cmetu01g1846 . Hepe02g0543 . . Cla02g00553 Cam02g0577 Cec02g0579 Cco02g0590 Clacu02g0577 Cmu02g0573 Cre02g0904 Cone12ag1130 Cone8ag1177 . . . Csa07g00826 . Cme01g00004 Blo04g00501 . . Bda14g00536 Bpe15g00880 . Bma03g00536 . . . . . Cma19g00646 . Car19g00491 . . . . . . . . . . . . . . . . Lsi11g01060 . Chy01g00004 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002592 1 4 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00826 Csa_Chr07 FPKM 0.0 0.0 0.043437 0.0 1.482381 1.010385 1.714805 0.423396 0.393394 0.653184