Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00828 ATGCAAAGACGTTTACGTTTGAAGGGTATGAAAGAAATAAAGGTGCTAGAAGCTGACATGCTAGACATGCCTTTTGGCAATGAGTGTTTTGATGTCGTTGTCGAGAAAGGAACCATGGATGTTCTGTTCGTGGATGGTGGTGACCCATGGAATCCTCAACCATCCACTCGGGCAAAGGTCACGGCAGTGCTGGAAGGTGTTCATAGGGTTTTGAAGAAAGATGGCATTTTTGTCTCAATTACATTTGGCCAGCCGCATTTCAGGCGTCCCTTATTTAATGCTCCAGAATTTACATGGTCATTTGAGTGCAGTACTTTTGGCGATGGATTTCACTACTTCCTCTATACCTTGTGTAAGGGAAGGCGGTTGCCTAGTGATAAAGGTGAGGGTGAGAGGTTTGATGAGCCATCAGTCTGTTTACTTCAAGACGAGCTAGAGGGTGAAGATTACATGTTCAGAACCGACGTTGATGAGCTGAATTGCTAG 486 44.86 MQRRLRLKGMKEIKVLEADMLDMPFGNECFDVVVEKGTMDVLFVDGGDPWNPQPSTRAKVTAVLEGVHRVLKKDGIFVSITFGQPHFRRPLFNAPEFTWSFECSTFGDGFHYFLYTLCKGRRLPSDKGEGERFDEPSVCLLQDELEGEDYMFRTDVDELNC* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5832137 5834973 - CsaV3_7G010260.1 Csa07g00828 536391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00828 161 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 116 IPR029063 -
Csa07g00828 161 Pfam Methyltransferase domain 10 78 IPR013216 GO:0008168
Csa07g00828 161 PANTHER EEF1A LYSINE METHYLTRANSFERASE 4 1 152 - -
Csa07g00828 161 Gene3D Vaccinia Virus protein VP39 1 131 IPR029063 -
Csa07g00828 161 CDD AdoMet_MTases 1 82 - -
Csa07g00828 161 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 1 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00828 K22857 EEF1AKMT4; EEF1A lysine methyltransferase 4 [EC:2.1.1.-] - csv:101212540 341.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00828 Csa-Chr7:5832137 Csa07g01979 Csa-Chr7:19416304 8.36E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g545 . . . . . Bpe12g00072 . . Cmo19g00656 . . . . . Sed10g2078 . Cpe15g00519 Bhi05g01180 Tan02g0850 Cmetu01g2149 . Hepe02g0546 . . Cla02g00555 Cam02g0580 Cec02g0582 Cco02g0592 Clacu02g0580 Cmu02g0576 Cre02g0906 Cone12ag1129 . . . . Csa07g00828 . Cme01g00005 . Blo13g00558 Bda15g00020 . . . . . . . . . Cma19g00645 . . . . . . . . . . . . . . . . . . Lsi11g01056 . Chy01g00006 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00828 Csa_Chr07 FPKM 1.675788 1.885372 5.895447 6.536121 18.97356 17.55159 18.189436 4.342354 4.601051 5.025084