Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00852 ATGAGAGAGGGGGAGAATGGAGAAACGACGCCGTGTACGTTGGTGGAAACCAAAGAAGGGCGGCACAGTGGAGGAGCTTACAGAGCTTTTGCGGCGACGGTGATGGCTTCAATTGTTGTGATTTGGGCATACAGAGCAACCGGGATGCCTTCGGCGGGCCACCCTGGGCGGTGGACATGGATGGGAATGTTCATCTCTGAGATTATATTTGGTGTTTATTGGATTCTCTCTCAGTCTGTTCGTTGGCGTACCACTTTCAACTTTCCCTACAAACATCTACTCTTACAAAGGTACAATGACCACCAATTACCAAATGTCGACGTTTTCGTTTGCACAGCCGACCCCACTATCGAACCCCCGGTTTTGGTCATCAACACCGTCTTATCCGCTATGGCCTACGATTACCCAACTGAGAAATTGGCCATTTATCTCTCCGACGACGGGGGCTCCGAGTTCACATTCTATGCTCTTATTGAAGCTTCGAATTTCGCCAAGCATTGGTTGCCTTTTTGTAGAAAGTTCATGGTCGAGCCTAGGTCTCCGGAGGCCTACTTTTCTCTCAATTCTGCTTTGCATCATCGTTCCCAAGAGTGGATCGACATGAAGAAACTATTTGATGAAATGAAGGAGAGAATTAACTCGGTGGTTGAGATGGGGAGGGTTCCTAAGGAGATACGGGACCAAAATAAAGGTTTCTCTGAGTGGGACAATGGCATAACAAAGCAAAATCATCAATCCATTGTGAAGATAATATTTGATGGAAATAATCTTGATGATGTGGATATTCATGGAGGTGTACTACCAAAATTGGTGTACATGGCACGTGAAAAGAGACCCAATCATCCCCACCATTTTAAAGCTGGAGCTATGAATGCATTGATAAGAGTATCCTCAGAGATAACCAATGCTCCCTTCATCCTCAACTTAGACTGTGACATGTACTCAAATAATCCAGACACAATAAAGGAGTCACTATGTTTTTTCCTGGATGGAAAAAGAAGCCATGACATTGCATTTGTGCAATTCCCTCAATACTTTGATAACATTACAAAAAATATGCTATATGGCATTCCAGATCTAGTTATTAATGAGATTGAACTAGCTGGCATGGATGGATATGGCACTGCCTTGTATTGTGGCACTGGATGTTTCCATCGCAGAGAAGCTCTCAGCGGGAAGAAGTATGTTGAAGATCTTAATGGATCAATACATTTGGACGTGCCAACTGAAAAGAAAGTTCCAAAACCTGTTAATGAGTTGGAAGAAGCATGTAAGCTTCTCGTTGACTGCAACTTTGAAAATGGCTCTCAATGGGGAAGGGAGATGGGGTTAGTATATGGGTGTGCAGTCGAAGATATTGTTACTGGGTTGACAATACAGTGCAGAGGTTGGAGATCACTTTACTATAATCCAAAGAAAAGAGCTTTTTTAGGTCTTGCTCCGATTAGCTTGGATGTAGCTCTAGTTCAATATAAGAGGTGGTGTGAAGGCATGTTTCAAATTTTTTTGTCCAACTATTGCCCCTTCATACATGGACATGGGAAGATCAAATTTGGAGCTCAAATGGGATATTGTGTATATCTTTTATGGGCTCCACTTTCTATACCAATGCTGTATTATGCCACCGTTCCTGCACTTTGTCTCCTTAAAGGCATTCCCTTATTCCCAGAGGTGACAAGCTTATGGGCCATACCTTTTGCATATGTCTTTGTAATCAAGAACTGTTGGAGCGTAGCTGAGGCCATAACTTGTGGATGTACACTCAAAGCTTGGTGGAATTTACAAAGAATGTTACTTTTCAGAAGGACCACTGCGTTCTTCTTTGCTTTAATTGACACAGTCATCAAGCAGTTGGGGTTTTCTCAAACTAAATTTGCTGTGACTGCTAAAGTTGCAGCGGAGGATGTGTCGAAGCGATACGAACAAGAGATCATTGAGTTTGGGAGCTCAGATATAATGTATAGTATGATAGCAACATTTGCAATGCTAAACCTTTTTGGTTTATTGCTGGGAATTAAGAATGTTGCTGCTTTGAATTTGGAGTTGTTTTTCAAATGTTTGAACAAATTCATTCTCCAAATTATTCTTTGTGGGCTAATTGTTTTGATAAACTTGCCCACATATGAAGCCCTCTTCATTCGCAAGGACAAGGGGCGTTTGCCATCCTCTGTTTTGTTCAAGTCTGTTACTTCGGCTTTATTGGCTTGTATAATATATGTATTGTAG 2226 42.0 MREGENGETTPCTLVETKEGRHSGGAYRAFAATVMASIVVIWAYRATGMPSAGHPGRWTWMGMFISEIIFGVYWILSQSVRWRTTFNFPYKHLLLQRYNDHQLPNVDVFVCTADPTIEPPVLVINTVLSAMAYDYPTEKLAIYLSDDGGSEFTFYALIEASNFAKHWLPFCRKFMVEPRSPEAYFSLNSALHHRSQEWIDMKKLFDEMKERINSVVEMGRVPKEIRDQNKGFSEWDNGITKQNHQSIVKIIFDGNNLDDVDIHGGVLPKLVYMAREKRPNHPHHFKAGAMNALIRVSSEITNAPFILNLDCDMYSNNPDTIKESLCFFLDGKRSHDIAFVQFPQYFDNITKNMLYGIPDLVINEIELAGMDGYGTALYCGTGCFHRREALSGKKYVEDLNGSIHLDVPTEKKVPKPVNELEEACKLLVDCNFENGSQWGREMGLVYGCAVEDIVTGLTIQCRGWRSLYYNPKKRAFLGLAPISLDVALVQYKRWCEGMFQIFLSNYCPFIHGHGKIKFGAQMGYCVYLLWAPLSIPMLYYATVPALCLLKGIPLFPEVTSLWAIPFAYVFVIKNCWSVAEAITCGCTLKAWWNLQRMLLFRRTTAFFFALIDTVIKQLGFSQTKFAVTAKVAAEDVSKRYEQEIIEFGSSDIMYSMIATFAMLNLFGLLLGIKNVAALNLELFFKCLNKFILQIILCGLIVLINLPTYEALFIRKDKGRLPSSVLFKSVTSALLACIIYVL* 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6294877 6300393 - CsaV3_7G011490.1 Csa07g00852 536415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00852 741 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 242 406 IPR029044 -
Csa07g00852 741 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 95 200 IPR029044 -
Csa07g00852 741 SUPERFAMILY Nucleotide-diphospho-sugar transferases 120 506 IPR029044 -
Csa07g00852 741 Pfam Cellulose synthase 106 393 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa07g00852 741 Pfam Cellulose synthase 411 739 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa07g00852 741 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 9 738 - -
Csa07g00852 741 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 9 738 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00852 - - - csv:101211777 1528.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00852 Csa-Chr7:6294877 Csa07g01068 Csa-Chr7:10241751 0 dispersed
Csa07g00850 Csa-Chr7:6275577 Csa07g00852 Csa-Chr7:6294877 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g684 Blo03g00503 . . . . Bpe08g01089 . . . . Cma01g01070 Cma09g01017 Car01g00945 Car09g00922 Sed04g3648 Cpe06g00825 . Bhi09g01785 Tan01g3201 Cmetu01g0128 . . . . . . . . . . . . . . Cone15ag1276 . Csa07g00852 . . . . . . . . Bma07g01243 . . Cmo01g01111 Cmo09g01020 . . . . . . . . . . . . . . . . . . . . . . Chy01g01134 Cme01g00891
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000615 3 9 2 4 3 1 3 2 2 3 1 2 3 4 3 3 2 4 3 2 3 1 2 3 4 2 2 8 4 2 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00852 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.239763 1.596274 0.0
Csa07g00852 Csa_Chr00 FPKM 1.344943 2.214927 5.754083 6.46186 14.619557 13.511064 11.577704 9.364503 8.419675 12.599559