Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00858 ATGGCTGCCACCAAGTTCAACAAGAAGAAGGTTGTGAAACGGGACGACCCTTCATCGAAAAGGAAGAAGAAGGACGAGCTTTTCACTCCTAAGCGTTCTAAGGAGGAAGAGGATGACTCTGACCTTTCTGATGCTCTGGCTGAGGAAGAAGTAGATAATGGACTGATTGATAGTGATGAAGAAGGATCTGGTTCTGGTTCTGAAGATTCTTCGGATGGTGATGACCCTTTGGCTCATGATTTCCTCCAAGGAAGTGACGAAGATGAAGAGAATGATTCAGGCTCGGTTTCAAGTTCTGATTCTGACGAAACCGACATCGAAGACAAGTCGAGAATTATCGATGAGAAAAGGGCGAGGGAAGAAAAGGATGCAGCGGATGAAATGCAGCTCAATATTAAAGATGAGTCCGATGAGTTCAGATTACCAACCAAGGAGGAACTTGAGGAAGAGTCGCTTAGACCTCCTGACCTTTCAAGTTTACAAAGGCGGATAAGAGAGATTGTTCGAGTTCTTTCGAATTTCAAGGCTTTGAGGCAAGAGGGAGCAACCCGTAAGGACTATGTTGAACAACTTAAGAAAGATATTGGTTCGTACTATGGGTACAATGAGTTTCTTATTGGGGTGCTGGTTGAGATGTTTCCAGTAGTTGAGCTAATGGAACTTATTGAAGCTTTTGAAAAGCCTAGACCGATATGTTTGCGGACTAACACCTTAAAGACAAGAAGGCGGGATTTGGCTGATGTTCTGATTAACAGAGGTGTAAACTTAGATCCTTTGAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTTCCAATTGGAGCAACTCCTGAATATATGGCTGGTTTTTACATGCTACAAGGTGCGAGCTCCTTTCTGCCTGTAATGGCCCTTGCTCCTCAAGAAAAAGAACGAATTGTTGACATGGCGGCAGCACCTGGTGGTAAAACTACTTACATAGCGGCACTCATGAAAAATAGTGGGATGATATTTGCAAATGAAATTAAAGCACAAAGATTGAAGTCACTTACTGCAAATTTACATCGGATGGGAGTGACAAATACTGTTGTATGCAACTATGATGGGAAGGAGCTCCCAAAAGTATTGGGCATGAATACAGCTGATAGAGTTCTATTAGATGCCCCTTGCAGTGGATCTGGAGTTGTATCCAAGGATGAATCTGTTAAAACCTCAAAAAGCTTGGAAGAAATCCAGAAATGTGCTGAGTTGCAGAAGCAACTTATACTTGCTGCAATTGACATGGTTGATTCAAATTCAAAATCTGGAGGATATGTTGTTTACTCCACATGCTCCATAATGGTTGATGAGAATGAAGCAATTGTTGACTATGCACTTAGAAAGAGGGATGTGAAGCTTGTGCCATGTGGCCTTGATTTTGGACGTCCTGGGTTTATCCGGTTCAGGGAAAAACGTTTCCACCCATCTTTAGAAAAGACAAGACGTTTCTACCCTCATGTCCACAACATGGATGGTTTTTTTGTTGCAAAGTTGAAAAAAATGAGCAACAAGATTCCATCTGCAAAATCTTCGGAATCATTGAATGAGGCTGTGGAAGAAGATGATGATGACACAAAGAAAGTTGGAAATGAGAAGAACGACGGTGAATGTCTTCACCCACAATTAAACGACGGTGGAAAGGGAAAGAAGGGTTCACAAAACCACGTGGTTGGCAATGGCAAAGAATCCAAGCCCACTGTGGAAAGGAGTAAGAAGAGAAAATTTCCTTCAAGAGAGGAAATTTCAAGAGCTAGGGAGGAAAAACGACAAGCTTTGAGGGTAAAGAAACATGGGAGCAAGAAAGGGTAA 1836 42.27 MAATKFNKKKVVKRDDPSSKRKKKDELFTPKRSKEEEDDSDLSDALAEEEVDNGLIDSDEEGSGSGSEDSSDGDDPLAHDFLQGSDEDEENDSGSVSSSDSDETDIEDKSRIIDEKRAREEKDAADEMQLNIKDESDEFRLPTKEELEEESLRPPDLSSLQRRIREIVRVLSNFKALRQEGATRKDYVEQLKKDIGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGMIFANEIKAQRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGMNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAELQKQLILAAIDMVDSNSKSGGYVVYSTCSIMVDENEAIVDYALRKRDVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPSAKSSESLNEAVEEDDDDTKKVGNEKNDGECLHPQLNDGGKGKKGSQNHVVGNGKESKPTVERSKKRKFPSREEISRAREEKRQALRVKKHGSKKG* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6380384 6385935 - CsaV3_7G011550.1 Csa07g00858 536421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00858 611 MobiDBLite consensus disorder prediction 8 39 - -
Csa07g00858 611 MobiDBLite consensus disorder prediction 571 602 - -
Csa07g00858 611 Pfam 16S rRNA methyltransferase RsmB/F 298 508 IPR001678 GO:0008168
Csa07g00858 611 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 195 509 IPR029063 -
Csa07g00858 611 Coils Coil 118 138 - -
Csa07g00858 611 MobiDBLite consensus disorder prediction 40 68 - -
Csa07g00858 611 MobiDBLite consensus disorder prediction 529 547 - -
Csa07g00858 611 MobiDBLite consensus disorder prediction 102 154 - -
Csa07g00858 611 MobiDBLite consensus disorder prediction 515 611 - -
Csa07g00858 611 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 233 509 IPR011023 GO:0003723|GO:0006396|GO:0008757
Csa07g00858 611 Gene3D Sun protein; domain 3 187 294 - -
Csa07g00858 611 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 217 294 IPR031341 -
Csa07g00858 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 184 204 IPR023273 GO:0008168
Csa07g00858 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 217 229 IPR023273 GO:0008168
Csa07g00858 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 240 253 IPR023273 GO:0008168
Csa07g00858 611 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 36 572 IPR023267 GO:0001510
Csa07g00858 611 MobiDBLite consensus disorder prediction 1 154 - -
Csa07g00858 611 PRINTS RNA (C5-cytosine) methyltransferase signature 281 295 IPR023267 GO:0001510
Csa07g00858 611 PRINTS RNA (C5-cytosine) methyltransferase signature 310 320 IPR023267 GO:0001510
Csa07g00858 611 PRINTS RNA (C5-cytosine) methyltransferase signature 378 390 IPR023267 GO:0001510
Csa07g00858 611 PRINTS RNA (C5-cytosine) methyltransferase signature 432 448 IPR023267 GO:0001510
Csa07g00858 611 PRINTS RNA (C5-cytosine) methyltransferase signature 492 509 IPR023267 GO:0001510
Csa07g00858 611 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 221 510 IPR001678 GO:0008168
Csa07g00858 611 Gene3D Vaccinia Virus protein VP39 297 600 IPR029063 -
Csa07g00858 611 PANTHER BNACNNG49010D PROTEIN 36 572 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00858 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 1129.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02173 Csa-Chr4:22523759 Csa07g00858 Csa-Chr7:6380384 3.85E-08 dispersed
Csa04g02563 Csa-Chr4:25240404 Csa07g00858 Csa-Chr7:6380384 1.11E-18 dispersed
Csa06g03142 Csa-Chr6:26827979 Csa07g00858 Csa-Chr7:6380384 3.12E-16 dispersed
Csa06g03339 Csa-Chr6:27888472 Csa07g00858 Csa-Chr7:6380384 2.59E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g678 Blo03g00505 . Bda07g00413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0007 . . . . Csa07g00858 . . . . . . Bpe11g00590 . . Bma14g00679 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01039 Cme01g01121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00858 Csa_Chr07 FPKM 160.034485 173.686142 146.907272 140.767487 117.868843 115.588875 113.117157 276.535858 302.576965 273.884277