Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00874 ATGGACGAAGGAGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTCCATCGGAACGAGGCCATTTCGGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATACGAGGACCTGTATAACGATGTTAATGTTGGGGAGGGGTTCCTTCAGTCGTTGAGGAAGAGCGATGATTTGGGATTCAAGAGGGAGGAGGAACCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGGTGCTTCCATACCTGGTATTGGTGGAGGTGCGACTGAAGTTACTGGTTTAGGAGATGCCGGTGGGCGTACTGTTTCGGAGAGAGTAACAGAGGGTTACAATCAGATTCCAGATTTAAGAACGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGGCACCGGAGTTGGGATCAGAGTTGAATTAGGGCAAGGGAGCAAAGCCATCGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTGGGCATCAGGCTCCGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCCACAGCCACAGCCGCAGCCGCAGCCACAGCCACAGCCGCAGCACCATCACCAACCACCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTTAATGTCAATGGGGTTGGTGGAAACGGGTTCGCTAATATCGGGAGTGCAGGGGGAGGTGGCGGTGGAACAATTTTGTTTGTTGGGGATTTACATTGGTGGACTACAGATGCGGAGCTTGAGGTGGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATTCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGTCCCTGTGTAGTTGCATATGCATCACCGTTTAGTGTTAAGAAAATGGGAGAAGCCCAAGTTAGCAGGAACCAACAGATAGCCCAAGCTACTAATCCTCAAGCAAGGAGAGCGCCTAATGAGGCTGTAGGTAAAATTGGTGGAAATAGTATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAACTGGGGAAGGAGTAATGCTCATGGAATGGGTGGTCGAGGACCAGCTGGCCCAATGAGGGGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCTACCCCTCCTTTATTGCATCCCCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGTACATATGGTGGTTTTCCTGGAGCCCCAGCTCCCCCTTTCTCTGGAATTTTGTCATCCTTTCCTCCTGTCGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCAAGGTGGAGGGAGAGCAGGTGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCATTATGGTGAAGGCAGTCATGAAAGAGGGCCATGGGCAAATTCTGCGAAGGAGAAAGATAGAGGCTCTGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTCGGTTATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGACCTGACCATGACTGGCCAGATAGAAGGCCTCGTGAAGATAGAGATATAGGGCGTGAAAGGGATAAAGAGAGGGATCGAGATAGGGATAGAGAACGATCCCGAGATTATGAGCGTGGCCATCATGAACGTGATCGTGAACGTGAAAGGGATCGTGACCGTGATAGGTACAAGGACGACAGGGACAGATATTCTGATCATCATAGGTACAGAGACCGGGAACCAGAGCATGATGAGGATTGGGAAAGGGGACGGTCATCAAGGACTCATAGTCATAGCAAGTCCCGTTTATCACAAGAAGAAGAAAGCCGTTCAAGATCCAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCGGAATAG 2220 50.05 MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKSDDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIPDLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAPQQQQQQQQQQQQQQQQQQQQQQPQPQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFANIGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGPMRGRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPREDRDIGRERDKERDRDRDRERSRDYERGHHERDRERERDRDRDRYKDDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSHSKSRLSQEEESRSRSRDADYGKRRRLTSE* 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6682448 6687382 + CsaV3_7G012700.1 Csa07g00874 536437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00874 739 SUPERFAMILY RNA-binding domain, RBD 187 336 IPR035979 GO:0003676
Csa07g00874 739 MobiDBLite consensus disorder prediction 379 398 - -
Csa07g00874 739 CDD RRM_CFIm68_CFIm59 262 335 - -
Csa07g00874 739 MobiDBLite consensus disorder prediction 357 415 - -
Csa07g00874 739 Gene3D - 168 353 IPR012677 -
Csa07g00874 739 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 738 IPR034772 -
Csa07g00874 739 MobiDBLite consensus disorder prediction 58 145 - -
Csa07g00874 739 MobiDBLite consensus disorder prediction 565 739 - -
Csa07g00874 739 MobiDBLite consensus disorder prediction 524 739 - -
Csa07g00874 739 MobiDBLite consensus disorder prediction 60 74 - -
Csa07g00874 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 331 IPR000504 GO:0003723
Csa07g00874 739 SMART rrm1_1 261 334 IPR000504 GO:0003723
Csa07g00874 739 MobiDBLite consensus disorder prediction 162 195 - -
Csa07g00874 739 Coils Coil 173 194 - -
Csa07g00874 739 MobiDBLite consensus disorder prediction 162 232 - -
Csa07g00874 739 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 738 - -
Csa07g00874 739 MobiDBLite consensus disorder prediction 196 210 - -
Csa07g00874 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 338 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00874 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 - csv:116405077 977.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00874 Csa-Chr7:6682448 Csa06g00415 Csa-Chr6:3611291 7.63E-08 dispersed
Csa07g00870 Csa-Chr7:6652225 Csa07g00874 Csa-Chr7:6682448 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g660 . Blo03g01482 Bda07g00411 Bda09g00437 . Bpe08g01092 . . . . Cma01g01076 Cma09g01007 Car01g00952 Car09g00919 . Cpe06g00817 Cpe02g00822 Bhi09g01762 . . . . Mch11g1266 . . . . . . . . . . . . Lsi02g01829 Csa07g00874 . . . . . . Bpe11g00588 . Bma07g01247 Bma14g00681 . Cmo01g01121 Cmo09g01010 . . . . . . . . . . . . . Cla09g02076 Cam09g2161 Cec09g2227 . . . . . . Chy01g01147 Cme01g00911
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002318 2 3 2 2 2 2 2 2 2 1 2 2 3 2 2 3 2 2 3 2 3 1 1 2 2 2 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00874 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0