Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g00911 | ATGGGTAGCCAAGATGCTAGACAACCACTGTTACCAACATCATCTAATACTTTAGAAACAAGGGTAATAAATATTCCTAGAAGCAAAAGGCGATTGAGGCGCACCAAGAGTGCTCCTCATGCAAATTCTCCTACTGAGATCACCCACACCAGCAACGTGCCGGCCACAGGTCCAGTTCCACGTTCAGGATTAATATTCGGAAATCTACACCCGAGTTTCAGAAGAGTAGCCTTAGTTTTAATAACATACCTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGCACCAAATCCAAGGGGAGAAAACAAACAGATTAGTTGATGCCATATATTTCACTATTGTGACAATGACAACTGTTGGGTATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTGCTAGCTTGTGCTTTCGTTTTCACAGGAATGGCCCTAGTTGGCCTAATACTGAGCAATGCAGCCGATTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCATATTGACCAAAATGGCCATTGTGACATTTCGAAAGAAATCGATACTAATAAAGCTAGAAACAAGTGCATAGTGGTGTTTCTCCTTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAGTTACCATTGAGAAGTTAGATTTTATTGATGCCTTTTATTGTGTATGTTCTACGATCACAACGCTAGGCTATGGAGATCAAAGCTTTTCAACCAAGTGGGGACGTGTGTTTGCCATTTTCTGGATCTTGATAAGCACCATCACTCTAGCTCAGTTTTTCCTTTACATTGCTGAGCTAAACACTGAAAGAAGGCAAAAGTCTCTTGTAAAGTGGGTTCTAAGTAAAAAGGTGACAGACATAGACCTTGAGGTTGCAGATATCGATGATGACGGTGTTGTCGGGGCTGCAGAATTTGTGATATACAAGCTGAAGGAGATGGGGAAGATTACTGAAGATGACATTTCACTTGTGTTGAATGAATTTGAGAATCTTGATGTTGATCAATCAGGAACACTGTCCATATCTGATATAACACTTGCTCAATTATCTTAA | 1065 | 40.38 | MGSQDARQPLLPTSSNTLETRVINIPRSKRRLRRTKSAPHANSPTEITHTSNVPATGPVPRSGLIFGNLHPSFRRVALVLITYLGIGTLCFYLVRHQIQGEKTNRLVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSNAADYLVEKQEILLFKAFHIDQNGHCDISKEIDTNKARNKCIVVFLLLLLFIISGTAFLVTIEKLDFIDAFYCVCSTITTLGYGDQSFSTKWGRVFAIFWILISTITLAQFFLYIAELNTERRQKSLVKWVLSKKVTDIDLEVADIDDDGVVGAAEFVIYKLKEMGKITEDDISLVLNEFENLDVDQSGTLSISDITLAQLS* | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 7773569 | 7774810 | + | CsaV3_7G015050.1 | Csa07g00911 | 536474 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g00911 | 354 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 21 | 348 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Csa07g00911 | 354 | SUPERFAMILY | EF-hand | 281 | 349 | IPR011992 | - | |
Csa07g00911 | 354 | PANTHER | TWO PORE POTASSIUM CHANNEL A | 21 | 348 | - | - | |
Csa07g00911 | 354 | PRINTS | Two pore domain K+ channel signature | 115 | 143 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Csa07g00911 | 354 | PRINTS | Two pore domain K+ channel signature | 231 | 240 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Csa07g00911 | 354 | Pfam | Ion channel | 199 | 270 | IPR013099 | - | |
Csa07g00911 | 354 | Pfam | Ion channel | 79 | 159 | IPR013099 | - | |
Csa07g00911 | 354 | SUPERFAMILY | Voltage-gated potassium channels | 186 | 291 | - | - | |
Csa07g00911 | 354 | MobiDBLite | consensus disorder prediction | 38 | 54 | - | - | |
Csa07g00911 | 354 | Gene3D | - | 70 | 164 | - | - | |
Csa07g00911 | 354 | SUPERFAMILY | Voltage-gated potassium channels | 70 | 168 | - | - | |
Csa07g00911 | 354 | MobiDBLite | consensus disorder prediction | 29 | 54 | - | - | |
Csa07g00911 | 354 | ProSitePatterns | EF-hand calcium-binding domain. | 336 | 348 | IPR018247 | - | |
Csa07g00911 | 354 | ProSitePatterns | EF-hand calcium-binding domain. | 297 | 309 | IPR018247 | - | |
Csa07g00911 | 354 | Gene3D | - | 177 | 292 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01542 | Csa-Chr1:11057256 | Csa07g00911 | Csa-Chr7:7773569 | 5.29E-120 | dispersed | |
Csa06g03762 | Csa-Chr6:29949293 | Csa07g00911 | Csa-Chr7:7773569 | 2.36E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g00911 | K05389 | - | csv:101216032 | 670.618 |