Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00911 ATGGGTAGCCAAGATGCTAGACAACCACTGTTACCAACATCATCTAATACTTTAGAAACAAGGGTAATAAATATTCCTAGAAGCAAAAGGCGATTGAGGCGCACCAAGAGTGCTCCTCATGCAAATTCTCCTACTGAGATCACCCACACCAGCAACGTGCCGGCCACAGGTCCAGTTCCACGTTCAGGATTAATATTCGGAAATCTACACCCGAGTTTCAGAAGAGTAGCCTTAGTTTTAATAACATACCTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGCACCAAATCCAAGGGGAGAAAACAAACAGATTAGTTGATGCCATATATTTCACTATTGTGACAATGACAACTGTTGGGTATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTGCTAGCTTGTGCTTTCGTTTTCACAGGAATGGCCCTAGTTGGCCTAATACTGAGCAATGCAGCCGATTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCATATTGACCAAAATGGCCATTGTGACATTTCGAAAGAAATCGATACTAATAAAGCTAGAAACAAGTGCATAGTGGTGTTTCTCCTTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAGTTACCATTGAGAAGTTAGATTTTATTGATGCCTTTTATTGTGTATGTTCTACGATCACAACGCTAGGCTATGGAGATCAAAGCTTTTCAACCAAGTGGGGACGTGTGTTTGCCATTTTCTGGATCTTGATAAGCACCATCACTCTAGCTCAGTTTTTCCTTTACATTGCTGAGCTAAACACTGAAAGAAGGCAAAAGTCTCTTGTAAAGTGGGTTCTAAGTAAAAAGGTGACAGACATAGACCTTGAGGTTGCAGATATCGATGATGACGGTGTTGTCGGGGCTGCAGAATTTGTGATATACAAGCTGAAGGAGATGGGGAAGATTACTGAAGATGACATTTCACTTGTGTTGAATGAATTTGAGAATCTTGATGTTGATCAATCAGGAACACTGTCCATATCTGATATAACACTTGCTCAATTATCTTAA 1065 40.38 MGSQDARQPLLPTSSNTLETRVINIPRSKRRLRRTKSAPHANSPTEITHTSNVPATGPVPRSGLIFGNLHPSFRRVALVLITYLGIGTLCFYLVRHQIQGEKTNRLVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSNAADYLVEKQEILLFKAFHIDQNGHCDISKEIDTNKARNKCIVVFLLLLLFIISGTAFLVTIEKLDFIDAFYCVCSTITTLGYGDQSFSTKWGRVFAIFWILISTITLAQFFLYIAELNTERRQKSLVKWVLSKKVTDIDLEVADIDDDGVVGAAEFVIYKLKEMGKITEDDISLVLNEFENLDVDQSGTLSISDITLAQLS* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7773569 7774810 + CsaV3_7G015050.1 Csa07g00911 536474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00911 354 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 21 348 IPR003280 GO:0005267|GO:0016020|GO:0071805
Csa07g00911 354 SUPERFAMILY EF-hand 281 349 IPR011992 -
Csa07g00911 354 PANTHER TWO PORE POTASSIUM CHANNEL A 21 348 - -
Csa07g00911 354 PRINTS Two pore domain K+ channel signature 115 143 IPR003280 GO:0005267|GO:0016020|GO:0071805
Csa07g00911 354 PRINTS Two pore domain K+ channel signature 231 240 IPR003280 GO:0005267|GO:0016020|GO:0071805
Csa07g00911 354 Pfam Ion channel 199 270 IPR013099 -
Csa07g00911 354 Pfam Ion channel 79 159 IPR013099 -
Csa07g00911 354 SUPERFAMILY Voltage-gated potassium channels 186 291 - -
Csa07g00911 354 MobiDBLite consensus disorder prediction 38 54 - -
Csa07g00911 354 Gene3D - 70 164 - -
Csa07g00911 354 SUPERFAMILY Voltage-gated potassium channels 70 168 - -
Csa07g00911 354 MobiDBLite consensus disorder prediction 29 54 - -
Csa07g00911 354 ProSitePatterns EF-hand calcium-binding domain. 336 348 IPR018247 -
Csa07g00911 354 ProSitePatterns EF-hand calcium-binding domain. 297 309 IPR018247 -
Csa07g00911 354 Gene3D - 177 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01542 Csa-Chr1:11057256 Csa07g00911 Csa-Chr7:7773569 5.29E-120 dispersed
Csa06g03762 Csa-Chr6:29949293 Csa07g00911 Csa-Chr7:7773569 2.36E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00911 K05389 - csv:101216032 670.618