Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00937 ATGATCGTCGAACTGAGCAATGGAAGCTCCAGGATGATCGCCATCGATCGATTCAAAAGTTACTGCTCCAATTCCCTTGAAAACTGTTGTTGTAGGTTCAATTTATCTGAAGGGAAGGATGTTCTAACACTTCAAAGGGAAAGCCACGTCCGTAGACTAGATGTCTTGCTTAGAGTTCTACTCATAATTCAGCAGCTTCTGGGAGAAAATAGACATAGCTCAAAGAGAGATATATATTATATGCATCCCTCTATATTTACAGATCAGTCAGTTGTTGACCGGGCAATCAACGACATCTGCATTCTTTTGCAATGTAGCCGGCATAATCTGAATGTGGTTTCTGTTGGTAATGGGTTGGTGATGGGTTGGTTGAGATTCTCAGAAGCTGGCAGAAGATTTGATTGCTTGAAGAAGCCTAACAGTGCCCACTTTATTCCTGTTCAAGTTGAAGAAGTTATAGATATTACTAGTGCTGCAGATTACATACTCGTTGTAGAGAAAGAATCAGTTTTTCAGCGTTTAGCAAATGACCGGTTCTGCAGCAGAAACCGGTGCATTGTAATCACGGGACGTGGATATCCAGATGTTCCCAGTAGAAGGTTTTTGCGGCTTCTCGTTGATGTTTTGGCATTGCCTGCATTTTGTTTGGTAGATTGTGATCCATACGGTTTTGACATTCTGACGACATATCGTTTCGGTTCTATGCAAATGGCCTACGATGCAAAGTATCTCAAAATCCCACAACTACGATGGCTTGGAGCTTTTGCTTCAGATTTTGAGAAATACAATCTGCCAGAACAATGTCTCATCCCATTGACTTTCAAGGACAAGAGTAGAACTGAAGCCTTGTTACAAAGATGCTACTTGCGTAGAGAGGTACAACATTGGAGGTGTTTGTTTAAGTCAAGACGGTGA 915 41.64 MIVELSNGSSRMIAIDRFKSYCSNSLENCCCRFNLSEGKDVLTLQRESHVRRLDVLLRVLLIIQQLLGENRHSSKRDIYYMHPSIFTDQSVVDRAINDICILLQCSRHNLNVVSVGNGLVMGWLRFSEAGRRFDCLKKPNSAHFIPVQVEEVIDITSAADYILVVEKESVFQRLANDRFCSRNRCIVITGRGYPDVPSRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRCLFKSRR* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8118753 8143617 - CsaV3_7G018280.1 Csa07g00937 536500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00937 304 SUPERFAMILY DNA topoisomerase IV, alpha subunit 50 297 IPR036078 GO:0003677|GO:0005694
Csa07g00937 304 Gene3D - 12 115 IPR036388 -
Csa07g00937 304 Pfam Type IIB DNA topoisomerase 51 112 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Csa07g00937 304 Coils Coil 302 304 - -
Csa07g00937 304 PRINTS SPO11 homologue signature 223 242 IPR013048 GO:0003677|GO:0003918|GO:0042138
Csa07g00937 304 PRINTS SPO11 homologue signature 258 282 IPR013048 GO:0003677|GO:0003918|GO:0042138
Csa07g00937 304 PRINTS SPO11 homologue signature 176 191 IPR013048 GO:0003677|GO:0003918|GO:0042138
Csa07g00937 304 PRINTS SPO11 homologue signature 81 101 IPR013048 GO:0003677|GO:0003918|GO:0042138
Csa07g00937 304 CDD TOPRIM_TopoIIB_SPO 160 296 IPR034136 -
Csa07g00937 304 PRINTS DNA topoisomerase VI subunit A family signature 107 122 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa07g00937 304 PRINTS DNA topoisomerase VI subunit A family signature 186 207 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa07g00937 304 PRINTS DNA topoisomerase VI subunit A family signature 89 106 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa07g00937 304 PRINTS DNA topoisomerase VI subunit A family signature 218 234 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa07g00937 304 PRINTS DNA topoisomerase VI subunit A family signature 75 86 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa07g00937 304 PRINTS DNA topoisomerase VI subunit A family signature 162 179 IPR002815 GO:0003677|GO:0003918|GO:0005694
Csa07g00937 304 Gene3D - 117 301 - -
Csa07g00937 304 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 2 298 - -
Csa07g00937 304 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 2 298 IPR002815 GO:0003677|GO:0003918|GO:0005694
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00937 K10878 SPO11; meiotic recombination protein SPO11 - csv:116406416 561.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00934 Csa-Chr7:8042858 Csa07g00937 Csa-Chr7:8118753 9.02E-42 dispersed
Csa07g00935 Csa-Chr7:8043508 Csa07g00937 Csa-Chr7:8118753 1.05E-167 dispersed
Csa07g00936 Csa-Chr7:8079632 Csa07g00937 Csa-Chr7:8118753 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g649 . Blo03g01480 . . . Bpe08g01095 . . . . . Cma09g01003 . Car09g00914 . Cpe06g00811 . Bhi09g01751 . . . . Mch11g1260 . . . . . . . . . . . . Lsi02g01841 Csa07g00937 . . . . . . . . Bma07g01249 . . . Cmo09g01003 . . . . . . . . . . . . . Cla09g02064 Cam09g2153 Cec09g2218 . . . . . . Chy01g01164 Cme01g00928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005619 0 4 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00937 Csa_Chr07 FPKM 61.269783 66.166946 44.022465 43.250683 49.100822 56.786823 47.326817 27.167213 27.777935 22.948231