Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00939 ATGTCCCCTCTCATTTTCCGATCCCGATTCTTTTCCCTTCTGAAGAATCGCCATGGCCGTCTTATGAGCTCCGACCTCGCTTCAACCCCTTCCAAAGATGCCCTCAATGCCTCTCAGAAGCTCGTCTCCGATCAGATTCCACCTGATGCTCAAACCACTTCTGCTATTTCTTCTTCTTCTTCCTCTAGTAAGCCCTGGAATTTCTTCAAGTATAGTTTGATTGGTGCTCTCACAGGTGCAACTGCGGTTGCTGGTTACGCCAGTTATGCCTATAGTTATGATGAAATTGAGGAGAAGGCGAAAGCTTTACGTCGTTCTGCTAGTCATACTGCCACTGACGATGTCTCAGGGATTGATAAAGTTCAGGGCATGCTCTACTCCACGATAATGACAGTTCCTGCAAAACTTGTTGACGTTTACCTGGATCTGAGGAAGACAATTGAAGAACAAGTTAAAGGTTATACTGAGCCCAATGCGGAAATGCTTCTTCCAGATTTGCATCCCATGGAACGACACGTGTTTACGCTTGTTTTAGATTTAAATGAGACTCTAGTGTACTCGGACTGGACGCGAGAAAGAGGCTGGCAGACGTTTAAAAGACCTGGAGTTGACTCTTTCTTGGAACATCTTGCCCAGTTTTATGAAATTGTTATATACTCTGATCAATCAAATATGTATGTTGATCCTGTCATTGAAAGGTTGGATCCCAAGCATTGCATACGATATAGGTTGTCAAGAGCAGCTACGAAGTATGAGAATGGAAAGCATTACAGGGATTTATCAAAGCTTAACAGAGATCCCAGGAAGATTATTTATTTGAGTGGCCATGCATCTGACAGCAGTCTACAGCCAGAAAATTCTGTTCCAATAAAGCCATGGAAGTGTGAGACAGATGACACAGCTCTTCTTGATTTTATACCATTTCTTGAATTTGTTGCGCGAAATAGTCCAGCTGACATCAGACAAGTACTAGAATCGTATAAAGGATGTGATATTCCAACAGAATTTATAAGACGTTCTAAAGAGCATCAAAGGCGGATTCAAGAACAGAAGCAGCAGGGGCGAATATGGAAACGTTGA 1080 42.78 MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSAISSSSSSSKPWNFFKYSLIGALTGATAVAGYASYAYSYDEIEEKAKALRRSASHTATDDVSGIDKVQGMLYSTIMTVPAKLVDVYLDLRKTIEEQVKGYTEPNAEMLLPDLHPMERHVFTLVLDLNETLVYSDWTRERGWQTFKRPGVDSFLEHLAQFYEIVIYSDQSNMYVDPVIERLDPKHCIRYRLSRAATKYENGKHYRDLSKLNRDPRKIIYLSGHASDSSLQPENSVPIKPWKCETDDTALLDFIPFLEFVARNSPADIRQVLESYKGCDIPTEFIRRSKEHQRRIQEQKQQGRIWKR* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8178093 8184039 + CsaV3_7G018300.1 Csa07g00939 536502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00939 359 SUPERFAMILY HAD-like 161 324 IPR036412 -
Csa07g00939 359 Pfam NLI interacting factor-like phosphatase 175 321 IPR004274 -
Csa07g00939 359 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 5 314 - -
Csa07g00939 359 SMART forpap2 172 300 IPR004274 -
Csa07g00939 359 MobiDBLite consensus disorder prediction 41 63 - -
Csa07g00939 359 CDD HAD_FCP1-like 174 290 - -
Csa07g00939 359 Gene3D - 159 342 IPR023214 -
Csa07g00939 359 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM50-LIKE 5 314 - -
Csa07g00939 359 ProSiteProfiles FCP1 homology domain profile. 169 312 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00939 K17496 TIM50; mitochondrial import inner membrane translocase subunit TIM50 - csv:101207617 699.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03756 Csa-Chr6:29910104 Csa07g00939 Csa-Chr7:8178093 7.63E-19 dispersed
Csa07g00938 Csa-Chr7:8150792 Csa07g00939 Csa-Chr7:8178093 2.64E-56 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g648 . . . . . . . . . . Cma01g01081 Cma09g01002 Car01g00956 Car09g00913 Sed07g2743 Cpe06g00810 Cpe02g00817 Bhi09g01749 Tan01g3181 Cmetu01g1982 . . Mch11g1259 . . . . . . . . . . Cone14ag1212 Cone15ag1233 Lsi02g01842 Csa07g00939 . . . . . . Bpe11g00582 . . Bma14g00172 . Cmo01g01127 Cmo09g01002 . . . . . . . . . . . . . Cla09g02063 Cam09g2152 Cec09g2217 . . . . . . Chy01g01165 Cme01g00930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005181 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 4 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00939 Csa_Chr07 FPKM 6.651573 5.638162 9.022015 9.691111 0.485852 0.411892 0.0 0.273377 0.139332 0.244093