Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00944 ATGAATAATGGAGGGTTTTTCCCTTGCATCATCGTTCTTGGTTTTCTTCTGCTGTGTGTCGCTGGAGGGAGCAGCGGTAGGGGTCGTGGTGGTGTGATCAGTTGGGATGATCTGCGTGTGGATGTTTGGCGGCGGCAGAGGATGAGCTCCAGCGAGGGGTTGGGGAATGGGACCAGAATCATTGTGGTCGATAAAAATTGCTCCGGCGACTCCACCACGGTGCAAGGGGCGGTGGATATGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTATATTCTTCCTGGCATTTACAGAGAGAAGGTATACATACCCATCACCAAGCCATATATTTCCTTGATTGGAAACAAGAATAGAGTTACAGATACTGTTATTACATGGAATGACAAAGCATCAGACAAAAGTATCGACGGAGTCGAGCTCGGGACGTATAGAACAGCAACAGTTGCAATAGACTCAGACTACTTTTGTGCCACAGGAATCACATTTGAGAATACAGTTGTGGCAAAGCCAGGAGATAAGGGAAGACAAGGCGTAGCATTAAGAATAACAGGAGATAAAGCAATGTTCTATAGAGTGAAATTCTTGGGAGGACAAGATACACTTCTAGATGATTTGGGCACACATTATTACTATCAATGTCACATTCAAGGAAGTGTTGATTTCATTTTTGGTACTGCTAGATCACTCTATGAGCAATGTGTGATAACTTCTACAGCAGAGAGCTATGGAGCAATAGCAGCACATCATCGAGCCTCACCAGACGATGACACCGGTTTCTCCTTCGTACGCTGTGTGATTAATGGAAGTGGGAAAGTATACCTGGGAAGAGCGTGGGGGAACTACTCAAGAACAATATATTCTAACTGTTACATTGAAGATGTAATCAATCCATTAGGATGGAGTGACTGGAATGACCCATCAAGACAAAGGACAGTAGCTTTTGGGCAATATAATTGCAGGGGCAGTGGAGCTAGCACTAAAGATTGGGTGAAATGGGCAAAGACCTTCAACTACGAGGAAGTGAGACCTTTTGTAGATAGGAAATACATCAAAGGAGAACAGTGGCTTAACTTATGA 1080 43.8 MNNGGFFPCIIVLGFLLLCVAGGSSGRGRGGVISWDDLRVDVWRRQRMSSSEGLGNGTRIIVVDKNCSGDSTTVQGAVDMVPHNNKQRVKIYILPGIYREKVYIPITKPYISLIGNKNRVTDTVITWNDKASDKSIDGVELGTYRTATVAIDSDYFCATGITFENTVVAKPGDKGRQGVALRITGDKAMFYRVKFLGGQDTLLDDLGTHYYYQCHIQGSVDFIFGTARSLYEQCVITSTAESYGAIAAHHRASPDDDTGFSFVRCVINGSGKVYLGRAWGNYSRTIYSNCYIEDVINPLGWSDWNDPSRQRTVAFGQYNCRGSGASTKDWVKWAKTFNYEEVRPFVDRKYIKGEQWLNL* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8228368 8231995 - CsaV3_7G018350.1 Csa07g00944 536507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00944 359 PANTHER PECTINESTERASE QRT1 16 359 - -
Csa07g00944 359 Pfam Pectinesterase 61 353 IPR000070 GO:0030599|GO:0042545
Csa07g00944 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 16 359 - -
Csa07g00944 359 SUPERFAMILY Pectin lyase-like 59 358 IPR011050 -
Csa07g00944 359 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Csa07g00944 359 Gene3D - 56 359 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00726 Csa-Chr4:4940430 Csa07g00944 Csa-Chr7:8228368 8.71E-86 dispersed
Csa05g00422 Csa-Chr5:2799276 Csa07g00944 Csa-Chr7:8228368 1.77E-91 dispersed
Csa07g00944 Csa-Chr7:8228368 Csa07g01935 Csa-Chr7:19147648 6.89E-86 dispersed
Csa07g00944 Csa-Chr7:8228368 Csa02g02065 Csa-Chr2:18904116 3.54E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00944 K01051 - csv:101209316 739.569