Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00960 ATGGGGGACTTAAAGATTCATAGAGCATCTGAAAAGCCCAATCTAGATTGGGAAGCATCACTCAAGCAGTATGAAAACGTAATGGCTTCAGAATCAGAAGCACTTAAAGTGAAAGCCACAATCAAATTAGCCCAACTCTCCAAAATTGCCCCGGAAAATATTTTGAAGAGTGTTATACCCATTATTGCTAAGCCTCTCGAAGATAACCCCACCAATAATGCAAGCCAATCCATGAGAGCCGCTGCTGCATATTGTCTAAGATGTATATCTTGTCGAGGTGATGGTACGTTGGCAACGGCGGTAGGTCATTCCGGCGCTTTAGAATCTTTGGTCAAGTCATTGCTACATTCTAGTGGTTGTTTTTGTAAGATTCTAGTGAAATGTATTTGGAGCATTGTTACTTTTGATCAAAGTAGTCGTGTGATTATAGCAAGAAATGGGGGTTTGGAAGTTATTATTTGTATGCTTGTTTTGGTAATTGATGGGACTAGGAGATATTTACTGGAGATTTTGAGTGCTATGGCACTACTGAGAGAGGTTAGGAAGGCCCTTATTAGATCAAGAGGCCTCCCTTTTCTTGTGCAAGCTGCTAGATTTGGCTGCATGGCTTCCAGAGAAAGAGCTTGTGAAGCAATTGGGTTAATTGCAATTACAAAACGTGGAAGAAACAAACTTGTTGAGTTGGGAGTGGTTCCAGTGCTTATTGAGCTACTTCGTGAAGGAGATTATGTGACAAAATTGGTGGCTGGTAATACCCTTGGAATAGTTTCAGCTCATCTGGCCTATATTAGGCCTGTTGCACAAGCTGGGGCTATCCCGTTATTTGCTGATCTTCTTCAGTGGTCTGATCCTATTTGTAAGGAGATTGCAGAGGATGTATTCTGTTTGTTAGCTGTTGCTGAAACGAATGCAGTTGTAATTTTTGATCATCTAGTGAAAGTTCTTAAAGAAGGTGATGATAGAGGAAAGGCAGCAGCTGCTGATGTATTGAGGATTCTTTCTAGCTATAAATACTCCATATCAGTTGTGCAGAATTCGGGTGCAATTCCAGTTTTGGTGGATCTATTACACGATGGGAATCACGAAGTGAGGGAAAAAGTCTCTGGAGCTATAGCACGATTAAGTTGTTATGAGACAGACAGGGTTGCACTTGCTGATGCAGGGGCAATCCAAGGACTAATAGGGCTATTGCAAGATGACTTAGAAAAAGTGAAACTTAATGTTACTGAGGCCGTTACAAGTTTTTCTAAAGACCCCTTATACTGTACTAGAGTAGCTGAAGCTATCAGCACTCCTGCTTTCCAGAATTTGCAGGAAAGAATAACTCATATTCGTGCTGCTGAATGGCAAAGCATGGTGTCTGTGCATCAATTGGGAATCAACCAATTTACATTTGATCTGGATCTTCTGTAA 1413 41.12 MGDLKIHRASEKPNLDWEASLKQYENVMASESEALKVKATIKLAQLSKIAPENILKSVIPIIAKPLEDNPTNNASQSMRAAAAYCLRCISCRGDGTLATAVGHSGALESLVKSLLHSSGCFCKILVKCIWSIVTFDQSSRVIIARNGGLEVIICMLVLVIDGTRRYLLEILSAMALLREVRKALIRSRGLPFLVQAARFGCMASRERACEAIGLIAITKRGRNKLVELGVVPVLIELLREGDYVTKLVAGNTLGIVSAHLAYIRPVAQAGAIPLFADLLQWSDPICKEIAEDVFCLLAVAETNAVVIFDHLVKVLKEGDDRGKAAAADVLRILSSYKYSISVVQNSGAIPVLVDLLHDGNHEVREKVSGAIARLSCYETDRVALADAGAIQGLIGLLQDDLEKVKLNVTEAVTSFSKDPLYCTRVAEAISTPAFQNLQERITHIRAAEWQSMVSVHQLGINQFTFDLDLL* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8466266 8469502 + CsaV3_7G018510.1 Csa07g00960 536523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00960 470 Gene3D - 258 443 IPR011989 -
Csa07g00960 470 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 347 389 IPR000225 GO:0005515
Csa07g00960 470 SUPERFAMILY ARM repeat 23 175 IPR016024 -
Csa07g00960 470 Gene3D - 17 257 IPR011989 -
Csa07g00960 470 SUPERFAMILY ARM repeat 164 443 IPR016024 -
Csa07g00960 470 Pfam Armadillo/beta-catenin-like repeat 341 375 IPR000225 GO:0005515
Csa07g00960 470 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 7 469 - -
Csa07g00960 470 PANTHER U BOX DOMAIN-CONTAINING 7 469 - -
Csa07g00960 470 SMART arm_5 300 335 IPR000225 GO:0005515
Csa07g00960 470 SMART arm_5 377 417 IPR000225 GO:0005515
Csa07g00960 470 SMART arm_5 336 376 IPR000225 GO:0005515
Csa07g00960 470 SMART arm_5 218 258 IPR000225 GO:0005515
Csa07g00960 470 SMART arm_5 177 217 IPR000225 GO:0005515
Csa07g00960 470 SMART arm_5 259 299 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00960 - - - csv:101212744 908.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00960 Csa-Chr7:8466266 Csa06g00194 Csa-Chr6:1333768 1.02E-11 dispersed
Csa07g00960 Csa-Chr7:8466266 Csa06g01498 Csa-Chr6:12659968 9.31E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g620 . . . . . . . . . . . . . . . . . Bhi09g01735 . . . . . . . . . . . . . . . . . . Csa07g00960 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012085 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 2 4 1 1 1 1 2 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00960 Csa_Chr07 FPKM 4.361829 5.801033 2.199537 2.369384 5.118814 4.487625 4.833953 6.549476 4.871999 5.129463