Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00984 ATGCCTGAGAAAGAGATTCACAATGTTGTTATACACCCTCGTCTTGTTGTTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGCTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTGGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACTGTGACCTACATGCTGCAGGGAAGTGTGACACATGAAGATTTTGAAGGTCACAAGGGAACAATTGGTGCAGGCGACTTGCAATGGATGACTGCAGGCAGAGGAATTGTACATTCAGAAATGCCTGCAGCCCAAGGTACCCAAAAGGGCCTCCAACTATGGATCAATCTATCTTCCAAGAACAAAATGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGGAATTCCAGAAGCTTCAAAAGATGGAGTGAGAGTGAAAGTCATTGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCAAAAGCGTATGTCCAACAGCCAATCCCGTCGTCTTGGAATGCATTCGTGTACATTCTTGAAGGCGAAGGTGTCTTCGGAAACTCAAAGGCAACATCAACAACAGAGCATAACCTTCTTCTTCTCGGGTACGGGGATGGTTTAGAGGTCTGGAATAAGTCGGGCAAGCCTCTTAGGTTCATTTTGGTAGGAGGTGAACCATTGAGTGAGCCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAATTATAGCAATGGGTTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGGGATTTCTCTTGGGTTCTAA 906 44.37 MPEKEIHNVVIHPRLVVRKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKGIPEASKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAYVQQPIPSSWNAFVYILEGEGVFGNSKATSTTEHNLLLLGYGDGLEVWNKSGKPLRFILVGGEPLSEPVVQFGPFVMNTQEEIDQTIDDFDNYSNGFEKARHWRSEAGISLGF* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8713044 8716345 - CsaV3_7G018750.1 Csa07g00984 536547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00984 301 Pfam Pirin 34 126 IPR003829 -
Csa07g00984 301 PIRSF Pirin 12 292 IPR012093 -
Csa07g00984 301 PANTHER PIRIN-RELATED 2 297 IPR012093 -
Csa07g00984 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Csa07g00984 301 PANTHER OS09G0484800 PROTEIN 2 297 - -
Csa07g00984 301 CDD cupin_pirin_C 176 252 - -
Csa07g00984 301 CDD cupin_pirin_N 33 128 - -
Csa07g00984 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Csa07g00984 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Csa07g00984 301 Pfam Pirin C-terminal cupin domain 179 282 IPR008778 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00448 Csa-Chr3:3782790 Csa07g00984 Csa-Chr7:8713044 4.50E-156 dispersed
Csa04g00384 Csa-Chr4:2357280 Csa07g00984 Csa-Chr7:8713044 7.60E-146 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00984 K06911 - csv:101216351 618.231