Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00986 ATGTCTTCTTCTTCCCGCTCTCTCCTTCTTTTCTTCTCTCTGTTTCTTCACTCCTTCCTCCCCCTGGTATCAGCTCAGGGATCTAACACTCCACCTCTATGGCAAACTCTGAGTGGAGATGCTCCATTTGTCGTGGCTCGCGGTGGATTTTCAGGGCTGTTTCCAGATTCAAGTGGAGTTGCCTACAATTTTGCAGCTATTGTTAGTGTTCCTGATGTGATCTTATGGTGCGATGTGCAATTAACCAAAGATGGAGTTGGAATATGTCTCCCGGATCTGAGGCTTGACAATGCAACTGATGCTTCGGTTATTCTGGGGACAACACGCACCCGTTCCTATTCTGTTAATGGTGTCTCTATGAGTGGATTGTTTACCGTTGATTATGATTTCAAAGAACTGGAAAATGTTTCTGTTGTTCAAGGTATCTATACTCGATCTACGAAGTTCGATGGCAATCAGTTTATTATTCTTACTCCTGAAGATGTGGCTAATCAGTTCAAGCCACGAGGATTTTGGCTTAATATTCAGCATGATGTGTTCTTCACGCAGCATAACGTGAGCATGAGAAACTTTGTACTTTCTGTGATCAGAACTAGAAGCACCATTGTTAACTATATATCATCACCAGAGGTGGGATTTCTTAGAAGTATAGCTGCACGAGTTCCCCGCACAACAAAGTTAATCCTTCGGTTCTTAGGACCAACTGATAGAGAGATTACCACCAATCAGACTTACGACTCGCTCAAACAAAATCTCACATTTATCAAGACATTTGCTTCTGGAATTCTTGTTCCCAAGACTTATATATGGCCTACTGAAGATAGTTATTTACAGGCTCAAACCTCTCTTGTTTCTGATGCTCATAAAGCACAGCTGGAAGTTTTTGCATCAGATTTCTATAGTGACCTTCCACTACCCTACAACTACAGTTATGATCCCGTTGCTGAATACCTGTCTTACTTTGACAATGGTAAATTTTCAGTTGATGGTGTGCTCAGTGATTTCCCTATTACTCCATCGTCAGCTATTGCCTGTTTTGCTCATCTGGGTAAGAATGCCAAAAGTCAAGACAAGCCTTTAGTTATTTCAAAATTTGGAGCTAGTGGAGACTTTCCTGCTTGTACAGATTTGGCGTATACGAATGCTATTTCAGATGGAGTTGAAGTGCTCGACTGTCCTGTTCAAATATCAAAAGATGGAATACCATTTTGCATGAGCTCAATTAATCTCATTGACAGCACAACAATATCTCAATCGCCATTCATAAACCGTTCAACAAATATTCCTGAAATTAGTCCTAACGATGGAGTCTTTGCTTTTGACTTAACATGGGAAGAGATTAAAAGCCTGACCCCGTCAATATTGAACCCTTATTCGGCGAAGTACACGTTGTTCCGAAACCCAAGGTTCAGAAACAGTGGGGAATTCAGAACACTACCTGATTTCTTGGCCTTGGCAAAGAATGCAAGCACTCTTTCTGGTGTCTTGATCCAAATTGAGAATGCAGCCTACCTTGCTAAGCATGGTTTTAGTGTAACTGATGCGGTCTTGTCTTCCTTGAGCGAAGCTGGTTATGATAATCAGACAGCCGTTAAAGTATTGATTCAATCTCCAGATAGCGCTGTTCTAATAAAATTTAAACAGGAAAATAAAAACTACGAGCTTGTTTACAAAGTTGACGAACCAATTAGTGATGTGCTCAATACAACTGTTGAGGACATTAAGAGTTTTGCCGACTCTGTAACTATCACCAAGAGCTCTGTCTTCCCTGTCAATCAGTTCTTTCTCACTGGAGCTACAGATGTCGTGAAGAAGCTGAAAGCACTCAATCTCTCTGTATATGTGGAATCCTTCAGCAATGAATTTGTCTCTCAAGCATGGGATTTCTTCTCGGATGCAACAGTAGAGATCAACTCATTTGTTTTGGGAGCCGAAATTGATGGAGTCATCACCGACTTTCCCAAGACATCTGCTAGATATAAAAAGAACCGATGTTTAACAATGAAAGAAACACCTACTTACATGAGCCCTGTCCAGCCTGGTAGCTTGTTGCAACTTATTACTCAGCCCTACTTGCCTCCGAAAACACCTCCGAGCCCGGTTCTAGATGACAAAGATGTAGCTGAGCCACCATTGCCTCCGGTTTCAGCCAAAGCCCCTCCACCTGCTGGGGAAGGTGGCTCGACAGCAGCACCTCCAACTTCTAAACCCAATGGACAACCTAAGCTTGGAGCTGGAGCAGGCTTATTGCTCTTGAACCTCGCCATACTTTTCATCGCTCTTCTTCCATTCTGA 2295 42.4 MSSSSRSLLLFFSLFLHSFLPLVSAQGSNTPPLWQTLSGDAPFVVARGGFSGLFPDSSGVAYNFAAIVSVPDVILWCDVQLTKDGVGICLPDLRLDNATDASVILGTTRTRSYSVNGVSMSGLFTVDYDFKELENVSVVQGIYTRSTKFDGNQFIILTPEDVANQFKPRGFWLNIQHDVFFTQHNVSMRNFVLSVIRTRSTIVNYISSPEVGFLRSIAARVPRTTKLILRFLGPTDREITTNQTYDSLKQNLTFIKTFASGILVPKTYIWPTEDSYLQAQTSLVSDAHKAQLEVFASDFYSDLPLPYNYSYDPVAEYLSYFDNGKFSVDGVLSDFPITPSSAIACFAHLGKNAKSQDKPLVISKFGASGDFPACTDLAYTNAISDGVEVLDCPVQISKDGIPFCMSSINLIDSTTISQSPFINRSTNIPEISPNDGVFAFDLTWEEIKSLTPSILNPYSAKYTLFRNPRFRNSGEFRTLPDFLALAKNASTLSGVLIQIENAAYLAKHGFSVTDAVLSSLSEAGYDNQTAVKVLIQSPDSAVLIKFKQENKNYELVYKVDEPISDVLNTTVEDIKSFADSVTITKSSVFPVNQFFLTGATDVVKKLKALNLSVYVESFSNEFVSQAWDFFSDATVEINSFVLGAEIDGVITDFPKTSARYKKNRCLTMKETPTYMSPVQPGSLLQLITQPYLPPKTPPSPVLDDKDVAEPPLPPVSAKAPPPAGEGGSTAAPPTSKPNGQPKLGAGAGLLLLNLAILFIALLPF* 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8736540 8743389 - CsaV3_7G018770.1 Csa07g00986 536549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00986 764 CDD GDPD_SHV3_repeat_1 42 342 - -
Csa07g00986 764 ProSiteProfiles GP-PDE domain profile. 42 343 IPR030395 GO:0006629|GO:0008081
Csa07g00986 764 Pfam Glycerophosphoryl diester phosphodiesterase family 366 656 IPR030395 GO:0006629|GO:0008081
Csa07g00986 764 Pfam Glycerophosphoryl diester phosphodiesterase family 77 296 IPR030395 GO:0006629|GO:0008081
Csa07g00986 764 ProSiteProfiles GP-PDE domain profile. 359 661 IPR030395 GO:0006629|GO:0008081
Csa07g00986 764 CDD GDPD_SHV3_repeat_2 359 660 - -
Csa07g00986 764 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 15 738 - -
Csa07g00986 764 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 15 738 - -
Csa07g00986 764 MobiDBLite consensus disorder prediction 695 740 - -
Csa07g00986 764 SUPERFAMILY PLC-like phosphodiesterases 41 339 IPR017946 GO:0006629|GO:0008081
Csa07g00986 764 Gene3D Phosphatidylinositol (PI) phosphodiesterase 357 660 IPR017946 GO:0006629|GO:0008081
Csa07g00986 764 Gene3D Phosphatidylinositol (PI) phosphodiesterase 41 341 IPR017946 GO:0006629|GO:0008081
Csa07g00986 764 SUPERFAMILY PLC-like phosphodiesterases 357 660 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00601 Csa-Chr1:3860780 Csa07g00986 Csa-Chr7:8736540 7.90E-22 dispersed
Csa06g03214 Csa-Chr6:27226701 Csa07g00986 Csa-Chr7:8736540 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00986 - - csv:101216597 1440.63