Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00987 ATGGAATTTTTCCAAACGGTGAAAAACATCGGCAGCGATCATGCTCAGGTCATCCCCTTGACGCTCTTCGTCGCCGTTCTCTGTTTCTGTCTGGTTATTGGCCACTTGCTTGAAGAAAATCGATGGGTCAATGAATCAATCACCGCCATTATCATCGGAGTTGTTACTGGAACGATCATATTGGTCTGCAGCAAGGGGAAAAATTCTCATATCCTAACTTTTAATGAAGAAGTTTTTTTCATATATCTTCTTCCACCAATAATTTTCAATGCTGGATTTCAAGTTAAAAAGAAGCAGTTCTTCCATAACTTCTTGACCATTATGCTGTTTGGGGTGATTGGTGTTTTTATATCTGCATCTATTATAACCGCTGGCAGCCAGTGGCTGTTTCCCAGAATGGGCTTCCATGGTCTGTCAGCACGGGACTATGTTGCTATAGGCGCTATTTTTTCTTCCACAGACACAGTATGCACCCTGCAGGTATTGCACCAAGAGGAAACACCTTTACTCTACAGCCTAGTCTTTGGGGAAGGAGTAGTGAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCAGTAGGCTTAACAGCAAGACAGCCCTCCATCTTTTGGGAGATTTTTGTTACTTATTTTCAACTAGCACCGTCCTTGGATTGACCACTGGGCTTCTAACATCATATATCCTGAAAACCTTATATTTTGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAATGGTTTTAATGGCCTACCTATCGTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACAGTTTTCTTTTGTGGGATTATCATGTCGCACTATGCATGGCATAATGTGACTGATAGTTCAAGAATTACCACCAGGCATGTATTTGCAATGATGTCGTTCGTTGCTGAAACTGCAATATTTCTTTATGTGGGAATGGATGCTCTTGACATTGAGAAGTGGAAGATAACTAAATTAAGCTTGTGGAAGTTGCTTGGCACCTGCACCATCATAGTTCTTTTGGTATTGGTTGGTCGTGCGGCCTTTGTATTTCCTCTATCTGCCATATCTAATTACTTCATTAAACGTGAAGATAGATCGTCATCGCCTTCTATGATCTCATTTAAACAACAGATCATTATATGGTGGGCTGGATTGATGAGAGGAGCTGTATCCATTGCTCTGGCTTTTAAACAGTTCACATATTCCGGGGTTACAGTGGATCCAACCCATGCAACAATGATTACCAACACCACAATTGTTGTACTCTTCACGACAGTGGTATTTGGATTTCTAACGAAGCCACTCATAAGGTGTCTACTTCCTCCCAACCAAGCAAGTAGCAGTACAAGCAACTCAAGACCAAAGTTCACTGAAGAGGATATAACTCTCCCTTTGCTTTCCATGGAAGAGTCTGCTACGACTAATGTCCTCCGTGCCAAGGATAGTTTGTCGATGTTAATAGAGAGGCCTGTTTACACCATACATTACTTTTGGAGGAAATTTGATGATTCCTACATGAGACCTTTATTTGGAGGGTCTCGCCACAACCAACGACCGGGCGGATCTGGTTGTTAA 1590 42.01 MEFFQTVKNIGSDHAQVIPLTLFVAVLCFCLVIGHLLEENRWVNESITAIIIGVVTGTIILVCSKGKNSHILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISASIITAGSQWLFPRMGFHGLSARDYVAIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDISRLNSKTALHLLGDFCYLFSTSTVLGLTTGLLTSYILKTLYFGRHSSVRELAIMVLMAYLSYMLAELLELSGILTVFFCGIIMSHYAWHNVTDSSRITTRHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLSLWKLLGTCTIIVLLVLVGRAAFVFPLSAISNYFIKREDRSSSPSMISFKQQIIIWWAGLMRGAVSIALAFKQFTYSGVTVDPTHATMITNTTIVVLFTTVVFGFLTKPLIRCLLPPNQASSSTSNSRPKFTEEDITLPLLSMEESATTNVLRAKDSLSMLIERPVYTIHYFWRKFDDSYMRPLFGGSRHNQRPGGSGC* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8761829 8769840 + CsaV3_7G018780.1 Csa07g00987 536550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00987 529 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa07g00987 529 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa07g00987 529 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa07g00987 529 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa07g00987 529 PANTHER SODIUM/HYDROGEN EXCHANGER 4 520 - -
Csa07g00987 529 Gene3D - 139 191 - -
Csa07g00987 529 PANTHER SODIUM/HYDROGEN EXCHANGER 4 520 IPR018422 GO:0006812|GO:0015299|GO:0016021
Csa07g00987 529 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 20 455 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa07g00987 529 Pfam Sodium/hydrogen exchanger family 23 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01302 Csa-Chr5:13822662 Csa07g00987 Csa-Chr7:8761829 1.91E-11 dispersed
Csa07g00987 Csa-Chr7:8761829 Csa07g01780 Csa-Chr7:18158703 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00987 - - csv:101217775 1013.06