Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00996 ATGGACATTGATAAGACGATCAAAGTGAAAAAATCCTCCTTAGTTGGCAAGTCTGCCATACCAACCAAGAGATTTGATCCAAGTAAGATTTACAAGGAGGATAGAAGTGGGATGCTCCTATTAGATGCCAATTCGGAGAGGAGGTTAATGGACATGATGAAAAATGTTGCATCGTCAATTACTTTGGAAGACGTAATTAAGAAGCACAAAGTCCCATCTACTCATGCATATTCTTTAAAACATGTAGTGGACAAGACAATTAAGATGGGGAAGTTGGAAGGGTCAGTTGTGGCTGTTCGAGCTGCTCTGCGCAAGCTTGAGGAAGGATGTTGCATTGAGGATGCAGAAGCTGTTTGTGAGCCTGAAGTTCTTAACCACATATTTAAGTGGAAGAACAAACTCAGAGTATATCTTGCACCATTTCTGTATGGCATGCGCTACTCCTCCTTTGGTCGTCATTTTACAAAAGTTGAGAAACTTGTGGAGATTGTTGATAGGCTTCATTGGTACATAGAGAAAGGCAATACAATCGTGGATTTCTGCTGCGGGTGCAAATGA 558 41.22 MDIDKTIKVKKSSLVGKSAIPTKRFDPSKIYKEDRSGMLLLDANSERRLMDMMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEGCCIEDAEAVCEPEVLNHIFKWKNKLRVYLAPFLYGMRYSSFGRHFTKVEKLVEIVDRLHWYIEKGNTIVDFCCGCK* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9096184 9118575 + CsaV3_7G019860.1 Csa07g00996 536559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00996 185 PANTHER ENHANCED DOWNY MILDEW PROTEIN 35 184 - -
Csa07g00996 185 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 35 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00996 - - - csv:116405237 370.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00918 Csa-Chr7:7846768 Csa07g00996 Csa-Chr7:9096184 1.27E-128 dispersed
Csa07g00993 Csa-Chr7:8907638 Csa07g00996 Csa-Chr7:9096184 1.12E-91 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00996 Csa_Chr07 FPKM 20.940268 24.543333 7.057201 7.785865 1.569542 1.655917 1.403843 1.033415 1.133507 1.324291