Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01012 ATGAAAGAGCTTTTTAAAGTCGGAGGCGATTGTCCGAAGACTAACTACTTGTTTCTTGGCGATTTTGTTGACAGAGGATTTTACTCAGTCGAGACATTTCTATTACTACTCGCTCTAAAGGTGAGATATCCAGATCGAATAACTCTTATCAGAGGGAATCATGAAAGCCGTCAAATCACACAGGTTTATGGATTTTATGATGAGTGTCTTCGCAAATATGGCTCCGTGAATGTTTGGAGATACTGTACTGATATATTTGATTACTTAAGTCTCTCGGCTCTCATTGAAAACAAGATATTTAGCGTCCATGGTGGTCTGTCTCCTGCCATAACAACTCTAGATCAAATTAGAACAATTGATCGGAAGCAAGAAGTACCTCATGATGGTGCCATGTGTGACTTACTGTGGTCTGATCCTGAAGACATTGTAGATGGCTGGGGTTTGAGTCCCCGAGGTGCTGGTTTCCTGTTTGGTGGCAGTGTTGTGACTTCTTTCAACCACACAAACAACATTGATTATATTTGTCGAGCTCATCAGTTGGTAATGGAAGGTTATAAATGGATGTTTAATAATCAGATAGTCACAGTTTGGTCAGCTCCGAATTATTGTTACAGATGTGGTAATGTAGCTGCTATACTTCAACTGGATGAGAACCTTAACAAGCAGTTTTGCGTCTTTGATGCTGCTCCACAGGAATCAAGAGGAAACCCTGCGAAGAAACCTGCACCAGATTACTTCCTCTGA 744 40.99 MKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAITTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHTNNIDYICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILQLDENLNKQFCVFDAAPQESRGNPAKKPAPDYFL* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9367816 9376560 - CsaV3_7G021010.1 Csa07g01012 536575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01012 247 Pfam Calcineurin-like phosphoesterase 12 179 IPR004843 GO:0016787
Csa07g01012 247 SUPERFAMILY Metallo-dependent phosphatases 2 233 IPR029052 -
Csa07g01012 247 ProSitePatterns Serine/threonine specific protein phosphatases signature. 50 55 IPR006186 GO:0016787
Csa07g01012 247 CDD MPP_PP2A_PP4_PP6 1 230 - -
Csa07g01012 247 SMART pp2a_7 1 230 IPR006186 GO:0016787
Csa07g01012 247 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 247 - -
Csa07g01012 247 Gene3D - 1 247 IPR029052 -
Csa07g01012 247 PRINTS Serine/threonine phosphatase family signature 113 140 IPR006186 GO:0016787
Csa07g01012 247 PRINTS Serine/threonine phosphatase family signature 49 73 IPR006186 GO:0016787
Csa07g01012 247 PRINTS Serine/threonine phosphatase family signature 170 190 IPR006186 GO:0016787
Csa07g01012 247 PRINTS Serine/threonine phosphatase family signature 192 208 IPR006186 GO:0016787
Csa07g01012 247 PRINTS Serine/threonine phosphatase family signature 16 43 IPR006186 GO:0016787
Csa07g01012 247 PRINTS Serine/threonine phosphatase family signature 84 110 IPR006186 GO:0016787
Csa07g01012 247 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP-X ISOZYME 1 1 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01012 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] - csv:101220629 522.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02094 Csa-Chr5:24219727 Csa07g01012 Csa-Chr7:9367816 5.06E-115 dispersed
Csa07g01012 Csa-Chr7:9367816 Csa01g03442 Csa-Chr1:31392274 6.60E-79 dispersed
Csa07g01012 Csa-Chr7:9367816 Csa05g02387 Csa-Chr5:26040489 5.51E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g582 Blo03g00539 Blo03g01461 Bda07g00380 Bda09g00410 . Bpe08g01110 . . . . . Cma09g00974 Car01g00981 Car09g00888 Sed07g2701 . Cpe02g00791 Bhi09g01699 Tan01g3130 Cmetu10g1344 . Hepe01g1246 Mch11g1219 . . . . . . . . Cone6ag0042 Cone9ag0048 . . Lsi02g01878 Csa07g01012 . . . . . . . . Bma07g01282 Bma14g00321 . Cmo01g01157 Cmo09g00973 . . . . . . . . . . . . . Cla09g01035 Cam09g1091 Cec09g1090 Cco09g1111 . . Cre09g1056 . . Chy01g01058 Cme01g00995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007409 2 1 2 3 1 1 1 1 1 1 0 1 2 1 1 2 1 2 0 1 1 1 1 0 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01012 Csa_Chr07 FPKM 12.026279 13.298825 8.150927 8.308994 10.298607 4.792307 7.891065 9.48044 10.583424 12.68555