Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01013 ATGGCGTATACTTTGGAATCATGGACGAAGGAATACAATGAAGCTTTGAAACTCTCTGAAGATATCAATGGCATGATTTCTGAGAGAAGTTCACTTGCTGCGTCTGGACCGGAAGCTCAGCGTCATGCCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGAGTCAATTACCCAAACTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGCCGCAGGGACATGATTGGAAATTTGAGATCAAAGGCTAAGCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCCAACCGGGATAGCTTACTTGGCCCAGAAATAAAGCCAGCTGATGTCGTTAACAGAACAGAAGGCTTAGATAACCGAGGCCTAGTTGGTTTTCAACGACAAATTATGAGAGAGCAAGATGAAGGCCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATCGCATTAGCTGTCAATGAAGAACTTAACCTTCACACGAGACTGATTGATGATTTGGATGAACATGTCGATGTTACAGATTCCCGATTACGGCGGGTGCAGAAGAGGCTGGCAATATTGAACAAACAGATCAAGGGTGGTTGCACTTGCATGTCGATGATTTTATCAGTTGTTGGGATCGTCGTTCTCATTGCAGTCATATGGCTACTGGTCAAGTATTTGTAA 702 43.02 MAYTLESWTKEYNEALKLSEDINGMISERSSLAASGPEAQRHASAIRRKITILGTRLDTLQSQLPKLQGKQPIPEKEMNRRRDMIGNLRSKAKQMASTLNMSNFANRDSLLGPEIKPADVVNRTEGLDNRGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELNLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKQIKGGCTCMSMILSVVGIVVLIAVIWLLVKYL* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9389098 9391850 + CsaV3_7G021020.1 Csa07g01013 536576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01013 233 Pfam SNARE domain 174 224 IPR000727 -
Csa07g01013 233 SMART tSNARE_6 132 199 IPR000727 -
Csa07g01013 233 CDD SNARE_Qc 140 197 - -
Csa07g01013 233 Gene3D - 139 201 - -
Csa07g01013 233 SUPERFAMILY SNARE fusion complex 128 199 - -
Csa07g01013 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Csa07g01013 233 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 6 228 - -
Csa07g01013 233 PANTHER SYNTAXIN 6 228 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00456 Csa-Chr3:3838327 Csa07g01013 Csa-Chr7:9389098 9.76E-129 dispersed
Csa06g00630 Csa-Chr6:5273781 Csa07g01013 Csa-Chr7:9389098 3.11E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01013 K08503 - csv:101208669 430.254