Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g01013 | ATGGCGTATACTTTGGAATCATGGACGAAGGAATACAATGAAGCTTTGAAACTCTCTGAAGATATCAATGGCATGATTTCTGAGAGAAGTTCACTTGCTGCGTCTGGACCGGAAGCTCAGCGTCATGCCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGAGTCAATTACCCAAACTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGCCGCAGGGACATGATTGGAAATTTGAGATCAAAGGCTAAGCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCCAACCGGGATAGCTTACTTGGCCCAGAAATAAAGCCAGCTGATGTCGTTAACAGAACAGAAGGCTTAGATAACCGAGGCCTAGTTGGTTTTCAACGACAAATTATGAGAGAGCAAGATGAAGGCCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATCGCATTAGCTGTCAATGAAGAACTTAACCTTCACACGAGACTGATTGATGATTTGGATGAACATGTCGATGTTACAGATTCCCGATTACGGCGGGTGCAGAAGAGGCTGGCAATATTGAACAAACAGATCAAGGGTGGTTGCACTTGCATGTCGATGATTTTATCAGTTGTTGGGATCGTCGTTCTCATTGCAGTCATATGGCTACTGGTCAAGTATTTGTAA | 702 | 43.02 | MAYTLESWTKEYNEALKLSEDINGMISERSSLAASGPEAQRHASAIRRKITILGTRLDTLQSQLPKLQGKQPIPEKEMNRRRDMIGNLRSKAKQMASTLNMSNFANRDSLLGPEIKPADVVNRTEGLDNRGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELNLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKQIKGGCTCMSMILSVVGIVVLIAVIWLLVKYL* | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 9389098 | 9391850 | + | CsaV3_7G021020.1 | Csa07g01013 | 536576 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g01013 | 233 | Pfam | SNARE domain | 174 | 224 | IPR000727 | - | |
Csa07g01013 | 233 | SMART | tSNARE_6 | 132 | 199 | IPR000727 | - | |
Csa07g01013 | 233 | CDD | SNARE_Qc | 140 | 197 | - | - | |
Csa07g01013 | 233 | Gene3D | - | 139 | 201 | - | - | |
Csa07g01013 | 233 | SUPERFAMILY | SNARE fusion complex | 128 | 199 | - | - | |
Csa07g01013 | 233 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 137 | 199 | IPR000727 | - | |
Csa07g01013 | 233 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 6 | 228 | - | - | |
Csa07g01013 | 233 | PANTHER | SYNTAXIN | 6 | 228 | IPR045242 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00456 | Csa-Chr3:3838327 | Csa07g01013 | Csa-Chr7:9389098 | 9.76E-129 | dispersed | |
Csa06g00630 | Csa-Chr6:5273781 | Csa07g01013 | Csa-Chr7:9389098 | 3.11E-08 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g01013 | K08503 | - | csv:101208669 | 430.254 |