Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01031 ATGGCGGACGTGATGTTGATGAAGGAGATTGAGGATTCAGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCCATTCGTCTACCTCCTGGGGAGAATTTCGGAATTATTAGTGATGACGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTCGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTGTAGACCCTACTACAACAAAAACTTTAGGTTACTGCTTTATCGAGTATGGCACTCCACAGGAAGCTGAGCTTGCTAAAGAGAAGACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGAATTTAATAGACTTGTAAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAACCCATACACTCCTGGGGAAAATCTTCAACAGTGGCTTACCGATGAAAAAGCACGAGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTATTTTGGAATGATGCTAGGCATTTGAAGCCCGAACCTGTCTACAAGCGTCCATACTGGACCGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCTGTTTGGGGAGGAGCAGGTACCTTTAACCGTCTGATGCGTTTTGCCCATCAACAGGTTAAGTTAATCGATTTTTCTCCTGGCGAGAAATATTTGGTGACTTACAGCAGTCATGAGCCCAACAATCCCCGTGACGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTCATGAGAGATTTTAAGGGAAGTCCTGATGATTTTGTCACTGGAGGAACTGGTGGTGTTGCTGGGGTATCTTGGCCTTTGTTTAGGTGGGATGGTGGAAAAGATGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTGTTGACAAAAAGTCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCACCTACAGATCCCATTATTGCACTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCAGCTAGGGTGAGTCTTGTCCAGATCCCCAACAAGGAGGAGTTGAGACAAAAAAATCTTTTTAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACTCAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCCATTGAAGTGTTGGAGCTTGAGAATAAGAATGACAAGATCATTGCGTTTGCCTGGGAGCCAAAGGGTCACAGGTTTGCAGTTATTCATGGTGATAACCCAAAGCCGGATATTAGCTTTTACTCTATGCGAAGCACACACAGCAGTGGCCGAGTGTCAAAACTTACAACGCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCGCCTGGTGGACGTTTTATTATTCTTGCTGGCTTGAAAGGTTTCAATGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCAACTGCGGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCTACTGCTGTAACTTCGGTTCATGAGATGGAAAATGGTTTCAACATTTGGTCCTTTAATGGAAAACTCCTCTATCGAATCTTGAAGGACCATTTCTTTCAGTTTGCATGGCGCCCGAGGCCACCATCCTTCTTGAGTCCCGAGCAAGAGGAAGAGATAGCTAAGAATTTGAAGAAGTACACTAAGAAGTACGAAGCTGAAGATCAGGATGTATCTATGCTACTGAGTGAGCAAGATCGTGAGAAACGGAAAATGTTGAAGGACGATTGGGACAAGTGGTTGAATGAATGGAGGAGATTGCATGAAGAAGAGAAGTTGTTGCGGGAGAAGCTGCGGGATGGTGAAGCCAGTGATGAAGAAGAGGAATATGAAGCCAAAGAGGTTGAAGTTGAAGAGATTCTGGATGTATCGGAGGAAGTTTTGTCCTTTGATTTTGAGCAGTAA 2157 43.76 MADVMLMKEIEDSAGRLGIDLSQVDFDAIRLPPGENFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTTKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEEFNRLVKVPDEWAPPEINPYTPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRPYWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPNNPRDANRIVINIFDVRTGKVMRDFKGSPDDFVTGGTGGVAGVSWPLFRWDGGKDDKYFARIGKNVISVYETETFSLVDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPNKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISFYSMRSTHSSGRVSKLTTLKGKQANALFWSPGGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEQEEEIAKNLKKYTKKYEAEDQDVSMLLSEQDREKRKMLKDDWDKWLNEWRRLHEEEKLLREKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFEQ* 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9665342 9671212 - CsaV3_7G021200.1 Csa07g01031 536594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01031 718 CDD RRM_eIF3B 59 143 IPR034363 -
Csa07g01031 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Csa07g01031 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Csa07g01031 718 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Csa07g01031 718 SUPERFAMILY RNA-binding domain, RBD 58 139 IPR035979 GO:0003676
Csa07g01031 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Csa07g01031 718 PIRSF Transl_init_eIF3b 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Csa07g01031 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Csa07g01031 718 Gene3D - 417 621 IPR015943 GO:0005515
Csa07g01031 718 Coils Coil 687 707 - -
Csa07g01031 718 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Csa07g01031 718 Gene3D - 180 384 IPR015943 GO:0005515
Csa07g01031 718 SMART rrm1_1 61 143 IPR000504 GO:0003723
Csa07g01031 718 Gene3D - 59 143 IPR012677 -
Csa07g01031 718 PANTHER BNACNNG51870D PROTEIN 6 712 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00281 Csa-Chr4:1751459 Csa07g01031 Csa-Chr7:9665342 1.10E-19 dispersed
Csa07g01031 Csa-Chr7:9665342 Csa07g01314 Csa-Chr7:13046082 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01031 K03253 - csv:101216475 1440.63